Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   QMK58_RS07325 Genome accession   NZ_CP125377
Coordinates   1630939..1631574 (+) Length   211 a.a.
NCBI ID   WP_053161940.1    Uniprot ID   -
Organism   Pseudomonas sp. P8_241     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1625939..1636574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK58_RS07310 (QMK58_07330) - 1626766..1627545 (+) 780 WP_053161946.1 ABC transporter permease -
  QMK58_RS07315 (QMK58_07335) - 1627954..1628469 (-) 516 WP_053161944.1 DUF2062 domain-containing protein -
  QMK58_RS07320 (QMK58_07340) comA 1628606..1630840 (+) 2235 WP_320396085.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QMK58_RS07325 (QMK58_07345) exbB 1630939..1631574 (+) 636 WP_053161940.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QMK58_RS07330 (QMK58_07350) - 1631571..1631999 (+) 429 WP_053161938.1 ExbD/TolR family protein -
  QMK58_RS07335 (QMK58_07355) lpxK 1631999..1633009 (+) 1011 WP_053161936.1 tetraacyldisaccharide 4'-kinase -
  QMK58_RS07340 (QMK58_07360) - 1633034..1633219 (+) 186 WP_003179363.1 Trm112 family protein -
  QMK58_RS07345 (QMK58_07365) kdsB 1633216..1633980 (+) 765 WP_053161934.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QMK58_RS07350 (QMK58_07370) - 1633980..1634444 (+) 465 WP_053161933.1 low molecular weight protein-tyrosine-phosphatase -
  QMK58_RS07355 (QMK58_07375) murB 1634441..1635460 (+) 1020 WP_053161931.1 UDP-N-acetylmuramate dehydrogenase -
  QMK58_RS07360 (QMK58_07380) - 1635707..1636177 (+) 471 WP_320396086.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22930.04 Da        Isoelectric Point: 7.3615

>NTDB_id=831590 QMK58_RS07325 WP_053161940.1 1630939..1631574(+) (exbB) [Pseudomonas sp. P8_241]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAQRVIHELERYVNALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLSGSKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=831590 QMK58_RS07325 WP_053161940.1 1630939..1631574(+) (exbB) [Pseudomonas sp. P8_241]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTTTGAGTTCCATTGCGGCCATGGCGATTGTCGC
TGAGCGTCTATGGACCCTGAGAGCCAGCCGTGTGACCCCGGAGCACTTGCTTGGCCAGGTCTGGGTCTGGATCAAGGACA
AACAACTCAACAAGGAAAAACTCAAGGAATTGCGCGCCAACTCGCCGTTGGGCGAGATCCTGGCGGCGGGCCTGGCCAAC
TCCAAGCATGGTCGTGAGATCATGAAAGAGTGCATTGAAGAGGCTGCACAACGGGTCATTCATGAGCTGGAACGCTACGT
CAATGCGCTGGGAACGATCGCTGCCATGGCTCCGTTGCTGGGGCTTTTGGGTACGGTTCTGGGCATGATCGACATTTTCA
GTGCCTTCACCGGTAGTGGCATGACGACCAACGCCTCGGTATTGGCCGGTGGTATCTCCAAAGCCTTGATCACCACAGCC
GCAGGCCTGATGGTCGGTATCCCGGCGGTGTTTTTCCACCGATTCCTTCAACGCCGGATCGATGAGCTGGTGGTCGGTAT
GGAGCAAGAGGCCATCAAGCTGGTCGAGGTGGTTCAGGGCGACCGTGATGTGGACCTGTCCGGGAGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.36

100

0.844