Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   QMK51_RS08085 Genome accession   NZ_CP125375
Coordinates   1788493..1790727 (+) Length   744 a.a.
NCBI ID   WP_320393688.1    Uniprot ID   -
Organism   Pseudomonas sp. P9_31     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1783493..1795727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK51_RS08060 (QMK51_08070) - 1784502..1785161 (+) 660 WP_320393685.1 transglutaminase family protein -
  QMK51_RS08065 (QMK51_08075) - 1785205..1785828 (+) 624 WP_320393686.1 glutathione S-transferase -
  QMK51_RS08070 (QMK51_08080) - 1785961..1786893 (+) 933 WP_095634883.1 ABC transporter ATP-binding protein -
  QMK51_RS08075 (QMK51_08085) - 1786890..1787669 (+) 780 WP_258699598.1 ABC transporter permease -
  QMK51_RS08080 (QMK51_08090) - 1787841..1788356 (-) 516 WP_320393687.1 DUF2062 domain-containing protein -
  QMK51_RS08085 (QMK51_08095) comA 1788493..1790727 (+) 2235 WP_320393688.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QMK51_RS08090 (QMK51_08100) exbB 1790825..1791460 (+) 636 WP_258699601.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QMK51_RS08095 (QMK51_08105) - 1791457..1791885 (+) 429 WP_258699602.1 ExbD/TolR family protein -
  QMK51_RS08100 (QMK51_08110) lpxK 1791885..1792895 (+) 1011 WP_258699603.1 tetraacyldisaccharide 4'-kinase -
  QMK51_RS08105 (QMK51_08115) - 1792921..1793106 (+) 186 WP_007945752.1 Trm112 family protein -
  QMK51_RS08110 (QMK51_08120) kdsB 1793103..1793867 (+) 765 WP_258699604.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QMK51_RS08115 (QMK51_08125) - 1793867..1794331 (+) 465 WP_258699605.1 low molecular weight protein-tyrosine-phosphatase -
  QMK51_RS08120 (QMK51_08130) murB 1794328..1795347 (+) 1020 WP_320393689.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 744 a.a.        Molecular weight: 81394.51 Da        Isoelectric Point: 9.8247

>NTDB_id=831540 QMK51_RS08085 WP_320393688.1 1788493..1790727(+) (comA) [Pseudomonas sp. P9_31]
MRTGMMALALGLLALRFLPALPPAGLWLLLPVVGLMLLPFRTFPLAFLLFGFSWACANAQWALNDRLALNLDGETRWVEG
RVTGLPQQAEGVVRFELTDSQSRRTKLPRHLRLAWYGGPLVNSGEHWRLAVKLKRPAGLLNPRAFDYDAWLLAQRVGATG
TVKDGQRLREAQWAWRDGIRQRLQAVDAQGRTGALTALVLGDGAGLSREDWQVLQDTGTVHLLVISGQHIGLLAGLVYLL
IAGLARYGAWPKGLPWLPWACGLAFVAALGYGLLAGFEVPVRRACLMIGLVLLWRLRFRHLGAWWPLLLALDGVLLLEPL
ASLQPGFWLSFAAVAVLIFTFGGRLGPWRWWQTWTRAQWLIAIGLGPLLLVLGLPISLSGPLTNLLAVPWISLVVLPPAL
LGTLLLPVPYVGEGLLWLAGGLIDLLFRGLVLVAGQLPAWVPAAVPLWVWALGTLGAFLLLLPRGVPLRPLGWPMLLLLV
FPPRHTLPEGMAEVWQLDVGQGLAILVRTCDHTLLYDAGPRFGDIDLGERVVLPSLRKLGVDGLDLMLISHADADHAGGA
RAIANAIPVKQVLSGDHLALPDELHAEGCESGQQWAWDGVKFQLWQWPSASESNQKSCVLQIEANGERLLLTGDIDSAAE
RALLDSPLAVPTDWLQAPHHGSRSSSSTALLSTLQPKAVLISRGNGNSFGHPHPTVVARYQKRGVAIYDSAVQGAIRLQL
GRFAPPWTMLQERRFWRDRPPLSQ

Nucleotide


Download         Length: 2235 bp        

>NTDB_id=831540 QMK51_RS08085 WP_320393688.1 1788493..1790727(+) (comA) [Pseudomonas sp. P9_31]
ATGCGCACAGGGATGATGGCGCTGGCGTTGGGTTTGCTGGCCCTGCGTTTTTTACCGGCGTTACCGCCGGCAGGGTTGTG
GCTGTTGTTGCCGGTAGTGGGATTGATGCTGCTGCCGTTTCGCACCTTTCCCCTGGCATTTTTGTTGTTCGGTTTCAGTT
GGGCTTGCGCGAACGCCCAGTGGGCGCTGAATGATCGCCTAGCGCTGAATCTCGATGGCGAGACTCGCTGGGTCGAAGGC
CGTGTGACGGGTTTGCCGCAGCAGGCCGAGGGCGTGGTGCGTTTCGAGCTGACGGACAGCCAGTCCCGTCGCACCAAGCT
GCCTCGGCACCTGCGTCTGGCCTGGTATGGCGGGCCGCTCGTCAACAGTGGCGAGCATTGGCGGCTGGCCGTCAAATTGA
AGCGTCCTGCCGGGTTGCTCAACCCGCGTGCGTTCGATTATGACGCCTGGTTACTGGCCCAACGCGTCGGCGCCACCGGG
ACCGTCAAGGACGGCCAACGGCTGAGGGAGGCGCAATGGGCCTGGCGCGATGGCATCCGTCAGCGCTTGCAAGCTGTGGA
TGCCCAAGGGCGAACGGGGGCGCTGACGGCGTTGGTGCTGGGGGATGGCGCCGGGCTGAGCCGCGAAGACTGGCAGGTGT
TGCAAGACACCGGCACCGTGCATCTGCTGGTGATTTCCGGGCAACACATTGGTTTGCTGGCAGGGTTGGTGTATCTGCTG
ATCGCCGGGCTGGCTCGTTATGGTGCGTGGCCCAAGGGCTTGCCGTGGCTGCCATGGGCGTGCGGGCTGGCGTTCGTGGC
GGCGCTCGGTTATGGACTGCTGGCCGGCTTCGAGGTGCCGGTGCGTCGGGCCTGCCTGATGATCGGTCTGGTGCTGTTGT
GGCGGCTACGGTTTCGTCACCTCGGCGCATGGTGGCCGCTGTTGCTGGCGCTTGACGGCGTTTTGCTGCTGGAGCCGCTG
GCGAGCCTGCAACCGGGTTTCTGGTTGTCCTTCGCGGCAGTAGCGGTACTGATCTTCACCTTTGGCGGACGATTGGGGCC
GTGGCGTTGGTGGCAAACCTGGACCCGCGCCCAATGGCTGATCGCGATCGGTCTGGGCCCGCTGCTGTTGGTGCTGGGGT
TGCCGATCAGTCTCAGCGGGCCGCTGACGAACCTGTTGGCGGTGCCCTGGATCAGTCTGGTGGTGTTGCCGCCGGCCTTG
CTCGGAACGCTGTTGTTGCCTGTTCCTTATGTGGGCGAAGGGTTGCTGTGGTTGGCCGGTGGTCTGATCGACCTTCTGTT
CAGAGGGTTGGTGTTGGTGGCTGGGCAATTACCCGCGTGGGTGCCGGCGGCGGTCCCGTTGTGGGTATGGGCGCTCGGCA
CGCTGGGGGCGTTTCTTCTGTTGCTGCCCAGAGGCGTGCCGTTGCGCCCGTTGGGCTGGCCGATGCTGCTGTTGCTGGTT
TTTCCGCCCCGGCACACGTTGCCTGAAGGCATGGCCGAGGTCTGGCAGCTGGATGTCGGCCAGGGATTGGCCATCCTGGT
GCGTACTTGCGATCACACCCTGCTGTATGACGCCGGGCCACGGTTCGGCGATATCGACCTGGGGGAGCGGGTGGTGTTGC
CATCATTGCGCAAACTGGGCGTGGACGGCCTCGATCTGATGCTGATCAGCCATGCCGATGCCGATCATGCCGGCGGTGCG
CGAGCGATTGCCAACGCAATACCAGTGAAGCAAGTACTGAGTGGCGATCACTTGGCCCTGCCAGACGAACTGCACGCCGA
GGGCTGCGAGAGCGGTCAGCAATGGGCCTGGGACGGCGTGAAGTTCCAACTCTGGCAGTGGCCGTCAGCCAGCGAGAGTA
ATCAGAAATCCTGCGTGCTGCAGATCGAAGCCAACGGCGAACGGCTGCTGCTGACCGGCGATATTGATAGCGCGGCCGAG
CGGGCGCTGCTCGACAGTCCATTGGCGGTGCCGACGGATTGGTTGCAGGCACCGCACCATGGCAGTCGCAGTTCGTCGTC
GACGGCATTGCTCAGCACCTTGCAACCCAAAGCGGTGCTGATTTCCCGTGGCAACGGCAATTCTTTCGGCCATCCCCATC
CCACGGTCGTGGCGCGGTATCAAAAGCGCGGTGTGGCGATCTACGACAGCGCTGTGCAGGGTGCCATTCGTCTACAACTG
GGACGCTTCGCACCGCCGTGGACGATGCTTCAGGAACGGCGTTTCTGGCGCGATCGGCCACCATTGAGCCAGTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-681)

Domain of unknown function (DUF4131) (DUF4131)

(22-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.778

96.774

0.608
  comA Ralstonia pseudosolanacearum GMI1000

33.049

100

0.364