Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   QMK51_RS04470 Genome accession   NZ_CP125375
Coordinates   973320..974909 (-) Length   529 a.a.
NCBI ID   WP_320394477.1    Uniprot ID   -
Organism   Pseudomonas sp. P9_31     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 968320..979909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK51_RS04455 (QMK51_04460) - 970290..970691 (+) 402 WP_258699014.1 type IV pilin protein -
  QMK51_RS04460 (QMK51_04465) thiO 970747..971847 (+) 1101 WP_320393267.1 glycine oxidase ThiO -
  QMK51_RS04465 (QMK51_04470) pilR 971977..973323 (-) 1347 WP_320393268.1 sigma-54 dependent transcriptional regulator Regulator
  QMK51_RS04470 (QMK51_04475) pilS 973320..974909 (-) 1590 WP_320394477.1 ATP-binding protein Regulator
  QMK51_RS04475 (QMK51_04480) - 974899..975132 (-) 234 WP_258699017.1 PP0621 family protein -
  QMK51_RS04480 (QMK51_04485) - 975269..976285 (-) 1017 WP_320393269.1 outer membrane protein assembly factor BamD -
  QMK51_RS04485 (QMK51_04490) rluD 976437..977399 (+) 963 WP_007901932.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QMK51_RS04490 (QMK51_04495) pgeF 977396..978121 (+) 726 WP_258699019.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58621.45 Da        Isoelectric Point: 6.8629

>NTDB_id=831535 QMK51_RS04470 WP_320394477.1 973320..974909(-) (pilS) [Pseudomonas sp. P9_31]
MVAETPSPGNKQAQRLLRLYHLYRLSIGITLVLLISSNMDNQLLKFANDDLLRNGSWLYLVLNILLVVFLGNTRRPSQLF
SLALVDVLLLCGLFYAAGGVASAIGNLLIVSVAISNTLLRGRIGLLIAAVGALGIVGLSFILSFSHSTNPSDYLQIGTLG
ALCFAAALLVQGLIRRLEVSETLAEQRASEVLGLEALNALILQRMRTGILVLDDQRRVQLANHSALTLLGQEKLDGQLID
DYSKPLVERLQLWFNNPTLRPQSLKIASNGLELQPSFIALDQSPHHQTLVFLEDLAQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLEESEELNGADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTMPQRLDLKPWLEHFVAETREGATER
QQIHLCIGSGDFKTLMDPNQLTQVLDNLLRNAWRHSALQHDQAQAWLELFIDPDSQLPTLEVLDDGPGVASDQRAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=831535 QMK51_RS04470 WP_320394477.1 973320..974909(-) (pilS) [Pseudomonas sp. P9_31]
GTGGTCGCTGAGACGCCCAGTCCCGGCAACAAACAGGCCCAGCGATTGCTGCGCCTCTATCACCTCTACCGCTTAAGCAT
CGGCATCACCTTGGTGCTGTTGATCTCCAGCAACATGGACAACCAGTTGCTGAAGTTCGCCAATGACGACCTGCTGCGCA
ATGGCAGCTGGTTGTATCTGGTACTGAATATCCTGCTGGTGGTCTTTCTGGGGAACACCCGGCGTCCCTCGCAGCTGTTC
AGCCTGGCGCTGGTCGATGTCCTGCTGCTGTGCGGCCTGTTCTACGCCGCAGGCGGCGTGGCCAGCGCCATCGGCAATTT
GCTGATCGTGTCGGTGGCCATCAGCAATACCCTGCTGCGCGGGCGTATCGGCCTGCTGATCGCAGCGGTCGGCGCCCTCG
GCATCGTCGGTTTGAGCTTCATCCTGAGCTTCAGCCACTCCACCAACCCCAGCGATTACCTGCAAATAGGCACCCTCGGC
GCCCTGTGTTTTGCTGCGGCGTTGCTGGTGCAAGGCTTGATCCGACGACTGGAAGTCAGCGAAACCCTGGCGGAGCAGCG
GGCCAGCGAAGTACTCGGCCTCGAAGCGCTCAACGCACTGATCCTGCAACGCATGCGCACAGGCATTCTGGTGCTCGACG
ACCAACGGCGGGTGCAACTGGCCAATCACAGTGCCTTGACCTTGCTCGGGCAGGAAAAGCTGGATGGCCAGTTGATCGAC
GATTATTCGAAGCCGTTGGTCGAGCGCCTCCAACTGTGGTTCAACAATCCGACTTTGCGCCCGCAAAGCCTGAAAATCGC
CAGTAATGGCCTGGAGCTGCAACCAAGCTTCATTGCCCTGGACCAAAGCCCGCACCACCAGACGCTGGTCTTTCTCGAAG
ACCTCGCCCAAATCGCCCAACAGGCCCAACAACTGAAACTCGCCGCCCTCGGTCGCCTGACCGCCGGTATTGCCCATGAG
ATCCGCAATCCACTGGGCGCCATTAGTCATGCCGCGCAGTTACTGGAGGAATCCGAGGAACTGAACGGCGCGGATCGGCG
TCTGACACAGATTATTCAAGACCACTCTCAGCGAATGAATCGGGTAATCGAAAACGTCCTGCAACTGTCCCGTCGCCAGC
AAACCATGCCGCAACGGCTTGATTTGAAGCCGTGGCTGGAGCACTTCGTCGCCGAAACCCGCGAAGGGGCGACCGAGCGT
CAGCAGATTCACCTGTGCATTGGTTCGGGAGACTTCAAAACCCTGATGGATCCGAATCAGCTGACCCAGGTTCTCGACAA
TCTATTGCGCAACGCCTGGCGCCATAGCGCCCTGCAGCACGATCAGGCACAGGCCTGGCTCGAGTTGTTTATCGACCCGG
ACAGCCAGTTGCCGACCCTTGAAGTCCTGGACGATGGCCCCGGCGTGGCGTCGGACCAGCGTGCACATTTGTTCGAACCG
TTCTTTACCACCAGCAGCCAGGGCACCGGCCTGGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAATCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.566

100

0.607