Detailed information NTG0831488

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QMK47_RS24965
• Genome accession: NZ_CP125373
• Coordinates: 5621545..5622414 (+)
• Length: 289 a.a.
• NCBI ID: WP_253469458.1
• Uniprot ID: -
• Organism: Pseudomonas sp. P9_35
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5616545..5627414

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QMK47_RS24940 (QMK47_24935)	-	5616724..5617020 (+)	297	WP_253469448.1	DUF2845 domain-containing protein	-
QMK47_RS24945 (QMK47_24940)	-	5617369..5617722 (-)	354	WP_003205664.1	BON domain-containing protein	-
QMK47_RS24950 (QMK47_24945)	-	5617991..5618398 (-)	408	WP_214512613.1	pilin	-
QMK47_RS24955 (QMK47_24950)	pilB	5618623..5620323 (+)	1701	WP_258689399.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QMK47_RS24960 (QMK47_24955)	pilC	5620326..5621543 (+)	1218	WP_214512611.1	type II secretion system F family protein	Machinery gene
QMK47_RS24965 (QMK47_24960)	pilD	5621545..5622414 (+)	870	WP_253469458.1	prepilin peptidase	Machinery gene
QMK47_RS24970 (QMK47_24965)	coaE	5622414..5623037 (+)	624	WP_258689400.1	dephospho-CoA kinase	-
QMK47_RS24975 (QMK47_24970)	yacG	5623034..5623240 (+)	207	WP_214512608.1	DNA gyrase inhibitor YacG	-
QMK47_RS24980 (QMK47_24975)	-	5623237..5623452 (-)	216	WP_053125334.1	hypothetical protein	-
QMK47_RS24985 (QMK47_24980)	-	5623516..5624202 (-)	687	WP_258689401.1	energy-coupling factor ABC transporter permease	-
QMK47_RS24990 (QMK47_24985)	-	5624240..5624653 (-)	414	WP_253469466.1	tautomerase family protein	-
QMK47_RS24995 (QMK47_24990)	-	5624805..5625704 (+)	900	WP_258689402.1	LysR substrate-binding domain-containing protein	-
QMK47_RS25000 (QMK47_24995)	-	5626393..5627019 (+)	627	WP_003205682.1	DUF1780 domain-containing protein	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31903.08 Da
• Isoelectric Point: 8.0578

>NTDB_id=831488 QMK47_RS24965 WP_253469458.1 5621545..5622414(+) (pilD) [Pseudomonas sp. P9_35]
MPLSEFFVLYPLAFVLVAALLGLIIGSFLNVLVWRLPKMLNREWRLQAHDLLGLPAETPGPVYNLMLPHSQCPHCGHRIR
AWENIPLLSYLMLRGRCSGCAAPIGRRYPLTELACGALSAFVAWHFGFGWHAAMVMVLTWGLLGMSLIDAEHQLLPDTLV
LPLLWLGLIINSFGLFVSLNQAMWGAVAGYLALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AVVGVIVLRLRDAPGSTQIPFGPYLAIAGWIALLWGGQITDFYWQSVGF

Nucleotide

• Length: 870 bp

>NTDB_id=831488 QMK47_RS24965 WP_253469458.1 5621545..5622414(+) (pilD) [Pseudomonas sp. P9_35]
ATGCCCCTGAGCGAATTCTTCGTGCTGTATCCCCTGGCTTTCGTGCTCGTTGCAGCACTGCTCGGCCTGATCATCGGCAG
CTTCCTCAACGTGCTGGTGTGGCGCCTGCCGAAGATGCTCAACCGCGAATGGCGCCTGCAGGCTCACGACCTGCTGGGCC
TGCCGGCCGAAACCCCTGGCCCGGTCTACAACCTGATGCTGCCACACTCCCAGTGCCCGCACTGCGGCCATCGCATCCGC
GCCTGGGAAAACATTCCGCTGCTCAGCTACCTGATGCTGCGCGGCCGCTGTTCGGGCTGCGCCGCGCCCATCGGCAGGCG
TTACCCCCTGACCGAATTGGCCTGCGGTGCGTTATCGGCGTTCGTCGCCTGGCATTTCGGCTTTGGCTGGCACGCCGCGA
TGGTGATGGTGTTGACCTGGGGCCTGCTGGGCATGAGCCTGATCGACGCCGAGCATCAATTGCTGCCCGATACCCTGGTG
CTGCCGTTGTTGTGGCTGGGTTTGATCATCAACAGCTTCGGGCTCTTCGTGTCCTTGAACCAGGCGATGTGGGGCGCGGT
GGCCGGCTATCTGGCGCTGTGGTCGGTGTTCTGGGTGTTCAAGCTGATCACCGGCAAGGAAGGCATGGGCTACGGGGATT
TCAAGCTGCTGGCGATGCTCGGCGCCTGGGGTGGCTGGCAGATCCTGCCGCTGACGCTGCTGCTGTCGTCGCTGGTGGGC
GCCGTTGTCGGGGTGATTGTGCTGCGCTTGCGTGATGCCCCGGGGTCGACGCAGATCCCCTTTGGACCCTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.465	98.27	0.516
pilD	Vibrio campbellii strain DS40M4	50.877	98.616	0.502
pilD	Acinetobacter baumannii D1279779	48.043	97.232	0.467
pilD	Acinetobacter nosocomialis M2	48.043	97.232	0.467
pilD	Neisseria gonorrhoeae MS11	47.038	99.308	0.467