Detailed information NTG0831458

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: QMK46_RS24735
• Genome accession: NZ_CP125372
• Coordinates: 5576992..5578338 (+)
• Length: 448 a.a.
• NCBI ID: WP_095048693.1
• Uniprot ID: -
• Organism: Pseudomonas germanica strain P9_87
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5571992..5583338

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QMK46_RS24710 (QMK46_24705)	pgeF	5572198..5572920 (-)	723	WP_095048691.1	peptidoglycan editing factor PgeF	-
QMK46_RS24715 (QMK46_24710)	rluD	5572917..5573879 (-)	963	WP_016986220.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
QMK46_RS24720 (QMK46_24715)	-	5574031..5575047 (+)	1017	WP_093434846.1	outer membrane protein assembly factor BamD	-
QMK46_RS24725 (QMK46_24720)	-	5575174..5575416 (+)	243	WP_093434843.1	PP0621 family protein	-
QMK46_RS24730 (QMK46_24725)	pilS	5575406..5576995 (+)	1590	WP_095125453.1	PAS domain-containing sensor histidine kinase	Regulator
QMK46_RS24735 (QMK46_24730)	pilR	5576992..5578338 (+)	1347	WP_095048693.1	sigma-54 dependent transcriptional regulator	Regulator
QMK46_RS24740 (QMK46_24735)	thiO	5578454..5579554 (-)	1101	WP_320413512.1	glycine oxidase ThiO	-
QMK46_RS24745 (QMK46_24740)	-	5579612..5580013 (-)	402	WP_095048695.1	type IV pilin protein	-
QMK46_RS24750 (QMK46_24745)	-	5580029..5583118 (-)	3090	WP_095048696.1	pilus assembly protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 50042.35 Da
• Isoelectric Point: 6.5130

>NTDB_id=831458 QMK46_RS24735 WP_095048693.1 5576992..5578338(+) (pilR) [Pseudomonas germanica strain P9_87]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTYSARNLAEAQALLNRESFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVGTALRMPAAGGSFTSIDRRLLGDSPPMRILRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRAGHPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAHGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQESVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPSLRERRDDIEVLA
ASMLKRLAKDTGQPAARLHPQALEALKNYRFPGNVRELENVLERAHTLCENRTIEAEDLRLSEGNCAADGGIADLTQIDN
LEDYLENVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=831458 QMK46_RS24735 WP_095048693.1 5576992..5578338(+) (pilR) [Pseudomonas germanica strain P9_87]
TTGAATACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAACCGGATATCCGCGAACTCCTGGAAATCACCTTGGG
ACGGATGAAGCTCGACACCTACAGCGCACGCAATCTGGCTGAAGCCCAGGCGCTGCTGAACCGCGAGAGTTTCGATCTGT
GCCTGACCGACATGCGCCTGCCCGACGGTACGGGGCTGGAGCTGGTGCAGCACATTCAGCAACGTTATCCACAACTGCCG
GTGGCGATGATCACCGCTTATGGCAGCCTGGAAACGGCCATCAACGCTTTGAAAGCAGGTGCTTTCGACTTCCTGACCAA
ACCGGTCGACCTTACGCGCCTGCGCGAACTGGTCGGCACAGCCCTGCGCATGCCGGCGGCGGGAGGCAGCTTTACCTCCA
TTGATCGGCGCTTGCTCGGCGATTCGCCACCGATGCGCATTCTGCGCAAGCAAATCGACAAACTCGCTCGCAGCCAGGCG
CCGGTGTACATCAGTGGCGAGTCGGGCAGCGGCAAGGAACTGGTCGCGCGGCTGATCCATGAACAAGGGCCGCGCGCCGG
CCATCCGTTCGTGCCGGTGAACTGTGGGGCAATTCCTTCCGAGCTGATGGAAAGCGAATTCTTCGGACATCGCAAAGGCA
GTTTCACCGGCGCGGTCGAGGACAAGCCCGGGTTGTTTCAGGCAGCCCATGGCGGTACGTTGTTTCTCGATGAAGTGGCG
GACTTGCCGTTGTCGATGCAAGTCAAACTGCTGCGGGCGATTCAGGAAAAAGCCGTGCGCAGTGTCGGCGGCCAGCAGGA
AAGCGTGGTCGATGTGCGGATTCTCTGCGCCACGCACAAGGATCTCGATGCAGAGGTCGCGGCCGAACGCTTTCGTCAGG
ACCTTTATTACCGCTTGAACGTGATCGAACTGCGCGTGCCGTCCCTGCGCGAAAGGCGTGATGATATTGAAGTGCTGGCG
GCCAGTATGCTCAAGCGTTTGGCCAAGGACACCGGCCAGCCGGCAGCACGCTTGCATCCGCAGGCGTTGGAAGCGCTGAA
GAATTACCGGTTTCCGGGGAACGTGCGGGAGTTGGAGAACGTTCTCGAACGGGCGCACACCTTGTGTGAAAACCGCACGA
TCGAGGCTGAAGACTTACGTCTGAGCGAAGGCAACTGCGCGGCAGATGGCGGTATTGCCGATCTGACCCAGATCGATAAT
CTGGAAGATTATCTGGAGAACGTCGAGCGGAAGCTGATCTTGCAGGCGCTGGAAGAAACGCGCTGGAATCGCACGGCGGC
GGCGCAGCGGTTGAGTCTTTCGTTTCGTTCGATGCGCTATCGGCTGAAGAAACTGGGCCTGGATTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

• Response regulator receiver domain (Response_reg) (9-118)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	80.135	98.884	0.792
pilR	Acinetobacter baumannii strain A118	48.584	100	0.498