Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   QMK46_RS24730 Genome accession   NZ_CP125372
Coordinates   5575406..5576995 (+) Length   529 a.a.
NCBI ID   WP_095125453.1    Uniprot ID   -
Organism   Pseudomonas germanica strain P9_87     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5570406..5581995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK46_RS24710 (QMK46_24705) pgeF 5572198..5572920 (-) 723 WP_095048691.1 peptidoglycan editing factor PgeF -
  QMK46_RS24715 (QMK46_24710) rluD 5572917..5573879 (-) 963 WP_016986220.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QMK46_RS24720 (QMK46_24715) - 5574031..5575047 (+) 1017 WP_093434846.1 outer membrane protein assembly factor BamD -
  QMK46_RS24725 (QMK46_24720) - 5575174..5575416 (+) 243 WP_093434843.1 PP0621 family protein -
  QMK46_RS24730 (QMK46_24725) pilS 5575406..5576995 (+) 1590 WP_095125453.1 PAS domain-containing sensor histidine kinase Regulator
  QMK46_RS24735 (QMK46_24730) pilR 5576992..5578338 (+) 1347 WP_095048693.1 sigma-54 dependent transcriptional regulator Regulator
  QMK46_RS24740 (QMK46_24735) thiO 5578454..5579554 (-) 1101 WP_320413512.1 glycine oxidase ThiO -
  QMK46_RS24745 (QMK46_24740) - 5579612..5580013 (-) 402 WP_095048695.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58540.09 Da        Isoelectric Point: 6.5576

>NTDB_id=831457 QMK46_RS24730 WP_095125453.1 5575406..5576995(+) (pilS) [Pseudomonas germanica strain P9_87]
MIAEATHADSKQAQRLLRLYHLYRLSIGITLVLLISSNMDNRLLTSANDELLRAGSWLYLILNILLVVFLENTRRPAQLF
SLALVDVLLLCGLFFAAGGVGSALGNLLIVSVAISNTLLRRRIGLLIAAIGALGIVGSSFLLGFNHPLSANEYLQAGTLG
ALCFAASLLVQGLIRRLEVSETLAEQRASEVVSLEALNALILQRMRTGILVLDEARRVQLANHSAQTLLAQSHLQGHLID
DYSTALVDRLQLWLNNPTLRPQSLKIPGNGLELQPSFIALEQSPHQQTLVFLEDLAQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLAESEELDSADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLENFVVESREQASER
QQIHLRINSGDFTTLMDPNQLTQILDNLLRNGWRHSALLHDQAEVWLSLFSDPDSQLAVLEVQDNGPGVPADEQTHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFQSRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=831457 QMK46_RS24730 WP_095125453.1 5575406..5576995(+) (pilS) [Pseudomonas germanica strain P9_87]
GTGATCGCTGAGGCCACCCACGCCGACAGCAAACAGGCGCAGCGCCTGCTGCGCCTTTATCATCTCTACCGCTTGAGTAT
CGGCATCACGCTGGTGCTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACGTCGGCCAACGACGAATTGCTGCGCG
CTGGCAGTTGGCTGTATCTGATCCTCAACATTCTGTTGGTGGTGTTCCTTGAGAACACCCGACGGCCAGCGCAGCTGTTC
AGTCTGGCCCTCGTCGATGTCCTGCTTTTATGCGGTTTGTTCTTTGCTGCGGGCGGCGTCGGTAGTGCGCTGGGCAATTT
GCTGATTGTCTCGGTGGCGATCAGCAACACCCTGCTACGGCGGCGCATCGGGCTATTGATCGCCGCCATCGGTGCGCTGG
GCATCGTCGGCTCGAGCTTCCTGCTCGGCTTCAACCATCCCCTTAGCGCCAATGAATACTTGCAGGCCGGCACCCTCGGT
GCGCTGTGCTTTGCCGCGTCGTTGCTGGTGCAGGGACTGATCCGCCGCCTCGAAGTCAGCGAAACCCTTGCCGAGCAACG
TGCCAGTGAAGTGGTCAGCCTCGAAGCCCTCAACGCGCTGATCCTGCAACGCATGCGCACCGGCATTCTGGTGCTCGACG
AGGCGCGGCGAGTGCAACTGGCCAATCACAGCGCGCAAACCCTGCTCGCGCAGTCGCACCTTCAGGGGCATTTGATCGAT
GACTATTCCACGGCGCTGGTCGATCGCCTGCAACTGTGGCTGAACAACCCGACCTTGCGCCCGCAGAGTCTGAAAATCCC
CGGCAACGGCCTGGAACTGCAACCGAGCTTCATTGCCCTCGAACAAAGCCCCCACCAGCAAACCCTGGTATTTCTCGAAG
ACCTCGCGCAAATCGCCCAGCAAGCCCAGCAACTTAAGCTCGCCGCACTCGGGCGCTTGACCGCCGGCATCGCCCACGAG
ATCCGCAATCCGTTGGGCGCCATCAGTCACGCCGCGCAGCTATTGGCTGAGTCCGAGGAACTCGATAGCGCGGATCGGCG
TCTGACGCAGATCATTCAAGACCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAACTGTCTCGCCGCCAGC
AAAGCGCGCCGCAACGCCTGGATCTCAAGCCATGGCTGGAAAACTTCGTTGTCGAAAGTCGTGAACAGGCCAGCGAACGC
CAGCAGATTCACCTGCGGATCAATTCGGGAGATTTCACCACGCTGATGGACCCGAACCAGCTCACGCAAATTCTCGACAA
TCTGCTACGCAATGGCTGGCGCCACAGCGCCCTGCTGCATGATCAGGCCGAAGTCTGGCTCTCGTTGTTCAGTGATCCCG
ACAGCCAGTTGGCGGTCCTCGAAGTGCAGGACAACGGCCCCGGCGTGCCTGCCGATGAACAGACACATCTGTTCGAACCC
TTCTTCACCACCAGCAGCCAGGGCACCGGCCTTGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAAGCGCGCCT
AGACTTTCAGTCACGCCAAGGCGGCGGTTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60

100

0.601