Detailed information NTG0831436

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: HX0037_RS15725
• Genome accession: NZ_CP139782
• Coordinates: 3195602..3196864 (+)
• Length: 420 a.a.
• NCBI ID: WP_003152620.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain HX0037
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 3190602..3201864

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HX0037_RS15705	leuC	3190684..3192102 (+)	1419	WP_007408145.1	3-isopropylmalate dehydratase large subunit	-
HX0037_RS15710	leuD	3192118..3192717 (+)	600	WP_007408146.1	3-isopropylmalate dehydratase small subunit	-
HX0037_RS15715	ddcA	3192835..3193839 (+)	1005	WP_094247685.1	DNA damage checkpoint antagonist DdcA	-
HX0037_RS15720	tig	3194056..3195330 (+)	1275	WP_003152618.1	trigger factor	-
HX0037_RS15725	clpX	3195602..3196864 (+)	1263	WP_003152620.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
HX0037_RS15730	lonB	3197015..3198673 (+)	1659	WP_003152622.1	ATP-dependent protease LonB	-
HX0037_RS15735	lon	3198873..3201197 (+)	2325	WP_052827698.1	endopeptidase La	-
HX0037_RS15740	yihA	3201194..3201781 (+)	588	WP_003152626.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-

Sequence

Protein

• Length: 420 a.a.
• Molecular weight: 46188.97 Da
• Isoelectric Point: 4.5163

>NTDB_id=831436 HX0037_RS15725 WP_003152620.1 3195602..3196864(+) (clpX) [Bacillus amyloliquefaciens strain HX0037]
MFKFNEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKDVPKPQEIREILNEYVIGQDQ
AKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILL
KLIQAADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI
LFICGGAFDGIEQIIKRRLGQKVIGFGSDNKAADLEKEELLSKVLPEDLLRFGLIPEFIGRLPVIASLEQLDETALVEIL
TKPKNALVKQYKKMLELDDVELEFEGEALSEIAKKAIERKTGARGLRSIIEGIMLDVMFDLPSRDDIEKCVITGATVADG
EAPRLVLKDGTVVGQDKTSA

Nucleotide

• Length: 1263 bp

>NTDB_id=831436 HX0037_RS15725 WP_003152620.1 3195602..3196864(+) (clpX) [Bacillus amyloliquefaciens strain HX0037]
ATGTTTAAATTCAACGAGGAAAAAGGACAATTGAAATGCTCGTTCTGCGGAAAAACGCAAGATCAGGTTCGTAAGCTGGT
TGCAGGACCGGGTGTATATATATGCGACGAATGTATTGAGCTCTGTACAGAAATCGTAGAGGAAGAGCTTGGTACAGAAG
AAGAAGTCGAATTTAAAGACGTTCCGAAGCCGCAGGAAATCCGTGAGATTCTGAATGAATATGTCATCGGACAGGATCAG
GCGAAGAAATCACTTGCGGTTGCGGTATACAACCATTACAAACGCATCAATTCCAACAGTAAAGTGGATGATGTTGAGCT
TTCTAAAAGTAATATTTCTTTAATCGGACCGACTGGAAGCGGGAAAACACTTCTTGCCCAGACGCTTGCGCGTATTCTGA
ACGTTCCGTTTGCGATCGCGGACGCTACATCTCTGACTGAAGCCGGATATGTCGGTGAGGACGTAGAAAATATCCTCCTC
AAGCTGATTCAGGCAGCAGACTATGATGTGGAAAAAGCAGAAAAAGGCATTATTTATATCGATGAAATCGATAAAGTAGC
GCGGAAATCTGAAAACCCGTCCATTACACGCGACGTATCAGGCGAAGGCGTTCAGCAGGCGCTGCTGAAAATTCTTGAAG
GAACGGTTGCAAGCGTGCCGCCTCAAGGAGGACGCAAACATCCTCATCAGGAATTCATCCAGATCGATACGACCAACATT
CTGTTCATTTGTGGCGGTGCATTTGACGGCATTGAACAAATCATCAAACGCCGTCTCGGACAAAAAGTCATCGGCTTCGG
CTCAGATAATAAAGCGGCAGACCTGGAAAAAGAAGAACTGCTTTCTAAAGTTCTTCCGGAAGACTTGCTCCGTTTCGGTC
TGATTCCTGAATTCATCGGCCGTCTTCCTGTCATTGCAAGCCTTGAGCAGCTTGACGAAACGGCACTGGTTGAAATTCTG
ACTAAACCGAAAAACGCACTCGTCAAACAATACAAGAAAATGTTAGAACTTGATGATGTCGAGCTTGAATTTGAAGGCGA
GGCATTATCTGAAATTGCGAAAAAAGCGATCGAGCGTAAAACAGGCGCACGCGGCCTGCGTTCTATCATTGAAGGCATCA
TGCTTGACGTCATGTTTGATCTGCCGTCCCGTGATGATATTGAAAAATGTGTCATTACCGGAGCGACAGTCGCAGACGGT
GAAGCGCCGCGTCTTGTATTAAAAGACGGCACTGTTGTCGGCCAAGATAAAACATCAGCATAA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (311-389)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

• AAA domain (Cdc48 subfamily) (AAA_2) (109-305)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	68.262	94.524	0.645
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	59.158	96.19	0.569