Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   HX0037_RS04595 Genome accession   NZ_CP139782
Coordinates   1041602..1042249 (-) Length   215 a.a.
NCBI ID   WP_070081558.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain HX0037     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1036602..1047249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HX0037_RS04570 nsrR 1038208..1038642 (+) 435 WP_007610306.1 nitric oxide-sensing transcriptional repressor NsrR -
  HX0037_RS04575 - 1038822..1040267 (+) 1446 WP_077721993.1 peptidoglycan endopeptidase -
  HX0037_RS04580 - 1040310..1040633 (-) 324 WP_003155332.1 DUF3889 domain-containing protein -
  HX0037_RS04585 - 1040825..1041067 (+) 243 WP_070081560.1 YhdB family protein -
  HX0037_RS04590 - 1041081..1041605 (-) 525 WP_017417341.1 NADPH-dependent FMN reductase -
  HX0037_RS04595 vraR 1041602..1042249 (-) 648 WP_070081558.1 response regulator Regulator
  HX0037_RS04600 - 1042249..1043385 (-) 1137 WP_094247111.1 GAF domain-containing sensor histidine kinase -
  HX0037_RS04605 - 1043531..1045273 (-) 1743 WP_071392057.1 phospho-sugar mutase -
  HX0037_RS04610 glpD 1045413..1047080 (-) 1668 WP_003155341.1 glycerol-3-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 23999.45 Da        Isoelectric Point: 6.3898

>NTDB_id=831365 HX0037_RS04595 WP_070081558.1 1041602..1042249(-) (vraR) [Bacillus amyloliquefaciens strain HX0037]
MKIVIADDHHVVRKGLRYFFATQEDIEVVGEASTGAEALHQAEKTEPDIILMDLSMPDMDGIEAAKIAAERFPDISIVVL
TSYSDQEHVIPALKAGAKAYQLKDAQPDDLVKTLREVYSGRYRLSADIVPHVLTHMVQDNQDKEKYYQLTPREKDVLQEI
AKGKSNKEIAAALFISEKTVKTHVSNLLSKLNLSDRTQAALYAVKYNVFGKAVKS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=831365 HX0037_RS04595 WP_070081558.1 1041602..1042249(-) (vraR) [Bacillus amyloliquefaciens strain HX0037]
ATGAAAATTGTGATTGCTGATGATCATCATGTTGTCCGCAAAGGACTGCGCTATTTCTTCGCCACTCAGGAAGACATTGA
AGTTGTCGGTGAGGCGTCCACCGGTGCTGAAGCGCTTCATCAAGCTGAAAAGACGGAGCCGGACATCATTCTGATGGATT
TATCAATGCCTGATATGGACGGCATTGAAGCGGCAAAAATTGCGGCTGAACGATTTCCGGACATCAGTATCGTCGTTTTG
ACGAGCTATTCTGATCAGGAGCACGTCATTCCCGCCCTTAAAGCCGGCGCAAAAGCGTATCAGCTGAAAGACGCTCAGCC
CGATGATTTAGTGAAAACGCTCCGGGAAGTGTATTCCGGACGTTACCGGCTGTCGGCGGATATTGTGCCTCACGTGCTGA
CCCATATGGTTCAGGATAATCAGGATAAGGAAAAATATTATCAGCTGACCCCCCGTGAAAAAGATGTTCTTCAAGAAATA
GCCAAAGGAAAAAGCAATAAGGAAATTGCGGCGGCACTGTTTATTTCAGAAAAAACAGTGAAGACCCACGTGTCCAACCT
GCTGTCAAAGCTGAATCTTTCCGATCGGACGCAGGCGGCATTGTATGCGGTAAAATATAATGTTTTTGGAAAGGCGGTAA
AATCATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-114)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

43.81

97.674

0.428
  degU Bacillus subtilis subsp. subtilis str. 168

38.356

100

0.391