Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   OPT59_RS03285 Genome accession   NZ_CP125360
Coordinates   622333..623142 (+) Length   269 a.a.
NCBI ID   WP_003059746.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain UT_120444     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 617333..628142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPT59_RS03260 (OPT59_03260) - 617706..618407 (-) 702 WP_015016780.1 amino acid ABC transporter permease -
  OPT59_RS03265 (OPT59_03265) - 618421..619221 (-) 801 WP_003057243.1 transporter substrate-binding domain-containing protein -
  OPT59_RS03270 (OPT59_03270) - 619221..620015 (-) 795 WP_003057217.1 amino acid ABC transporter ATP-binding protein -
  OPT59_RS03275 (OPT59_03275) vicR 620274..620984 (+) 711 WP_003057225.1 response regulator YycF Regulator
  OPT59_RS03280 (OPT59_03280) vicK 620977..622329 (+) 1353 WP_014612101.1 cell wall metabolism sensor histidine kinase VicK Regulator
  OPT59_RS03285 (OPT59_03285) vicX 622333..623142 (+) 810 WP_003059746.1 MBL fold metallo-hydrolase Regulator
  OPT59_RS03290 (OPT59_03290) rnc 623900..624592 (+) 693 WP_003057240.1 ribonuclease III -
  OPT59_RS03295 (OPT59_03295) smc 624593..628138 (+) 3546 WP_015016783.1 chromosome segregation protein SMC -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30157.38 Da        Isoelectric Point: 6.0739

>NTDB_id=831271 OPT59_RS03285 WP_003059746.1 622333..623142(+) (vicX) [Streptococcus dysgalactiae subsp. equisimilis strain UT_120444]
MIESGFKYSILASGSTGNCFYLETPKKRLLIDAGLTGKKITSLLAEIDRKPEDLDAILITHEHSDHIKGVGVMARKYHLD
VYANEKTWQLMDERNMLGKLDASQKHIFQRDKMLTFGDVDIESFGVSHDAVDPQFYRIMKDNKSFVMLTDTGYVSDRMTG
IIENADGYLIESNHDIEILRSGSYPWSLKQRILSDMGHLSNEDGAGAMIRSLGHKTKKIYLGHLSKENNIKELAHMTMVN
QLAMADLAVGTDFTVHDTSPDTACPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=831271 OPT59_RS03285 WP_003059746.1 622333..623142(+) (vicX) [Streptococcus dysgalactiae subsp. equisimilis strain UT_120444]
ATGATTGAAAGTGGTTTTAAATACAGTATTTTAGCATCCGGATCCACAGGCAATTGTTTTTATTTAGAAACACCTAAAAA
GCGATTATTAATTGACGCGGGGTTGACTGGTAAGAAAATCACCAGTCTCCTTGCTGAAATTGACCGCAAGCCTGAAGATT
TAGATGCTATTTTGATTACACATGAACATTCAGATCATATCAAGGGAGTGGGAGTGATGGCTCGCAAGTACCATTTGGAT
GTTTATGCCAACGAAAAAACATGGCAGTTGATGGATGAGCGTAATATGCTCGGGAAGCTTGATGCCTCCCAAAAACATAT
TTTCCAAAGAGATAAGATGTTGACCTTTGGAGATGTTGACATTGAAAGTTTTGGCGTTAGTCACGATGCGGTTGATCCTC
AGTTTTACCGCATTATGAAGGACAACAAATCGTTTGTGATGCTGACTGATACAGGTTATGTCAGTGACCGAATGACAGGT
ATTATTGAAAATGCAGATGGCTACTTGATTGAGTCCAATCATGACATTGAAATTTTACGGTCGGGTTCTTACCCTTGGAG
TTTAAAACAACGCATTTTGTCAGACATGGGCCATTTGTCAAATGAAGATGGCGCTGGAGCTATGATTAGAAGTTTAGGGC
ATAAGACCAAAAAAATCTATTTGGGCCATTTGAGTAAAGAAAATAACATCAAAGAGTTGGCTCACATGACCATGGTGAAC
CAATTAGCCATGGCAGATTTAGCGGTAGGTACAGACTTTACTGTTCATGACACTTCCCCAGACACAGCTTGTCCCTTGAC
GGATATTTAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.58

100

0.766