Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OPT60_RS08935 Genome accession   NZ_CP125359
Coordinates   1819956..1820447 (-) Length   163 a.a.
NCBI ID   WP_002983122.1    Uniprot ID   A0A9X8XIP7
Organism   Streptococcus dysgalactiae subsp. equisimilis strain UT_10236     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1814956..1825447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPT60_RS08920 (OPT60_08920) - 1817689..1818633 (+) 945 WP_011888617.1 magnesium transporter CorA family protein -
  OPT60_RS08925 (OPT60_08925) - 1818765..1819421 (+) 657 WP_003059462.1 DUF1129 domain-containing protein -
  OPT60_RS08930 (OPT60_08930) rpsR 1819552..1819791 (-) 240 WP_002983142.1 30S ribosomal protein S18 -
  OPT60_RS08935 (OPT60_08935) ssb 1819956..1820447 (-) 492 WP_002983122.1 single-stranded DNA-binding protein Machinery gene
  OPT60_RS08940 (OPT60_08940) rpsF 1820469..1820759 (-) 291 WP_002983117.1 30S ribosomal protein S6 -
  OPT60_RS08945 (OPT60_08945) - 1821718..1822011 (-) 294 WP_015058032.1 hypothetical protein -
  OPT60_RS08950 (OPT60_08950) mutY 1822177..1823343 (+) 1167 WP_084916729.1 A/G-specific adenine glycosylase -
  OPT60_RS08955 (OPT60_08955) trxA 1823394..1823708 (-) 315 WP_003052691.1 thioredoxin -
  OPT60_RS08960 (OPT60_08960) - 1823935..1825254 (+) 1320 WP_084916727.1 FAD-containing oxidoreductase -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17981.76 Da        Isoelectric Point: 4.8894

>NTDB_id=831236 OPT60_RS08935 WP_002983122.1 1819956..1820447(-) (ssb) [Streptococcus dysgalactiae subsp. equisimilis strain UT_10236]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=831236 OPT60_RS08935 WP_002983122.1 1819956..1820447(-) (ssb) [Streptococcus dysgalactiae subsp. equisimilis strain UT_10236]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCTTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.884

100

0.632
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.195

100

0.632
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

65.031

0.374
  ssbB/cilA Streptococcus pneumoniae TIGR4

54.128

66.871

0.362