Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   R8615_RS00265 Genome accession   NZ_AP026929
Coordinates   43514..44284 (+) Length   256 a.a.
NCBI ID   WP_000616164.1    Uniprot ID   Q97TA7
Organism   Streptococcus pneumoniae strain PZ900701114     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 38514..49284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8615_RS00245 (PC1101_00450) - 40254..40691 (+) 438 WP_000076479.1 CoA-binding protein -
  R8615_RS00250 (PC1101_00460) - 40732..41160 (+) 429 WP_317647650.1 hypothetical protein -
  R8615_RS00255 (PC1101_00470) - 41189..42199 (-) 1011 WP_000009170.1 YeiH family protein -
  R8615_RS00260 (PC1101_00480) - 42348..43517 (+) 1170 WP_000366342.1 pyridoxal phosphate-dependent aminotransferase -
  R8615_RS00265 (PC1101_00490) recO 43514..44284 (+) 771 WP_000616164.1 DNA repair protein RecO Machinery gene
  R8615_RS00270 (PC1101_00500) plsX 44281..45273 (+) 993 WP_000717458.1 phosphate acyltransferase PlsX -
  R8615_RS00275 (PC1101_00510) - 45279..45512 (+) 234 WP_000136447.1 acyl carrier protein -
  R8615_RS00280 (PC1101_00520) - 45549..45848 (+) 300 Protein_48 transposase family protein -
  R8615_RS00285 (PC1101_00530) blpU 46051..46281 (+) 231 WP_001093487.1 bacteriocin-like peptide BlpU -
  R8615_RS00290 - 46284..46409 (+) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  R8615_RS00295 - 46820..47014 (+) 195 WP_000756776.1 hypothetical protein -
  R8615_RS00300 (PC1101_00540) comR 47035..47928 (+) 894 WP_000343888.1 XRE family transcriptional regulator Regulator
  R8615_RS00305 (PC1101_00550) - 48471..48767 (+) 297 WP_000837726.1 uberolysin/carnocyclin family circular bacteriocin -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29787.35 Da        Isoelectric Point: 5.8959

>NTDB_id=83121 R8615_RS00265 WP_000616164.1 43514..44284(+) (recO) [Streptococcus pneumoniae strain PZ900701114]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDKRRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=83121 R8615_RS00265 WP_000616164.1 43514..44284(+) (recO) [Streptococcus pneumoniae strain PZ900701114]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTATTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGAGCATTATCATGAGGATAAGAGACGTTGTCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAATTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q97TA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

99.219

100

0.992