Detailed information NTG0083118

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: IFA22_RS21235
• Genome accession: NZ_AP023398
• Coordinates: 4598456..4599328 (+)
• Length: 290 a.a.
• NCBI ID: WP_077095240.1
• Uniprot ID: A0AAX3P7A8
• Organism: Aeromonas hydrophila strain KAM330
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4593456..4604328

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IFA22_RS21215 (KAM330_41460)	nadC	4593746..4594603 (+)	858	WP_077095238.1	carboxylating nicotinate-nucleotide diphosphorylase	-
IFA22_RS25910 (KAM330_41470)	-	4594926..4595366 (+)	441	WP_077095239.1	pilin	-
IFA22_RS21225 (KAM330_41480)	pilB	4595370..4597076 (+)	1707	WP_029302067.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
IFA22_RS21230 (KAM330_41490)	pilC	4597192..4598433 (+)	1242	WP_190283797.1	type II secretion system F family protein	Machinery gene
IFA22_RS21235 (KAM330_41500)	pilD	4598456..4599328 (+)	873	WP_077095240.1	prepilin peptidase	Machinery gene
IFA22_RS21240 (KAM330_41510)	coaE	4599347..4599961 (+)	615	WP_077095241.1	dephospho-CoA kinase	-
IFA22_RS21245 (KAM330_41520)	zapD	4599999..4600721 (+)	723	WP_024945431.1	cell division protein ZapD	-
IFA22_RS21250 (KAM330_41530)	yacG	4600731..4600925 (+)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
IFA22_RS21255 (KAM330_41540)	mutT	4600986..4601399 (-)	414	WP_179101298.1	8-oxo-dGTP diphosphatase MutT	-
IFA22_RS21260 (KAM330_41550)	-	4601408..4602592 (-)	1185	WP_077095243.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32438.68 Da
• Isoelectric Point: 6.7410

>NTDB_id=83118 IFA22_RS21235 WP_077095240.1 4598456..4599328(+) (pilD) [Aeromonas hydrophila strain KAM330]
MLLITDVFHSLPWLYFSLVFLFSLVIGSFLNVVIHRLPIMLEREWQAEYLGYFNPEAQPQQEERYNLMVPRSACPHCGHA
ITAMENIPLLSWLWLKGRCRECQAPISARYPLVELLTSLLSLVVAATFAPGWGLLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLTGGFAPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAFIGIGLILLRNHHQNKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide

• Length: 873 bp

>NTDB_id=83118 IFA22_RS21235 WP_077095240.1 4598456..4599328(+) (pilD) [Aeromonas hydrophila strain KAM330]
ATGTTGCTGATCACTGACGTTTTCCACAGCCTGCCCTGGCTCTATTTCTCGCTGGTATTCCTCTTTTCCCTGGTGATCGG
CAGTTTTCTCAACGTGGTCATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATATCTCGGCTATTTCA
ATCCGGAGGCACAGCCGCAGCAGGAAGAGCGCTACAACCTGATGGTGCCGCGTTCTGCCTGCCCCCATTGCGGCCACGCC
ATCACGGCCATGGAGAACATCCCCCTGCTCAGCTGGCTCTGGCTCAAGGGGCGCTGCCGTGAATGCCAGGCCCCCATCTC
GGCCCGTTATCCTCTGGTGGAACTGCTGACATCCCTGCTCTCGCTGGTCGTCGCCGCGACATTTGCACCGGGCTGGGGCT
TGCTGGCCGCCCTGCTGCTCACCTGGGTGCTGGTGGCACTCACTTTCATCGATCTGGACAAGATGCTGCTGCCGGATCAG
CTGACCCTGCCACTGCTGTGGGGCGGCCTGCTGTTCAATCTGACAGGGGGATTTGCACCGCTGGCCGATGCGGTGATCGG
CGCCATGGCCGGCTATCTGGTGCTCTGGAGCCTCTATTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGGTATG
GCGACTTCAAGCTGCTGGCGGCGCTGGGCGCCTGGCTCGGCTGGCAGGCACTGCCCATAGTGTTGCTGCTCTCGTCGCTG
GTTGGCGCTTTCATCGGTATTGGTCTCATCCTGCTGCGCAATCATCATCAGAACAAACCCATCCCCTTTGGCCCCTATCT
GGCCATCGCCGGCTGGATTGCGCTGCTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.976	98.966	0.603
pilD	Vibrio campbellii strain DS40M4	55.401	98.966	0.548
pilD	Acinetobacter baumannii D1279779	54.225	97.931	0.531
pilD	Acinetobacter nosocomialis M2	54.225	97.931	0.531
pilD	Neisseria gonorrhoeae MS11	48.718	94.138	0.459