Detailed information NTG0831017

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QMB36_RS03985
• Genome accession: NZ_CP125300
• Coordinates: 881494..882366 (-)
• Length: 290 a.a.
• NCBI ID: WP_054092017.1
• Uniprot ID: -
• Organism: Pseudomonas syringae pv. syringae strain B48
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 876494..887366

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QMB36_RS03955 (QMB36_03955)	-	877279..878577 (-)	1299	WP_003430739.1	NAD(P)/FAD-dependent oxidoreductase	-
QMB36_RS03960 (QMB36_03960)	-	878794..879327 (-)	534	WP_003317783.1	MOSC domain-containing protein	-
QMB36_RS03965 (QMB36_03965)	-	879324..879953 (-)	630	WP_003430735.1	DUF1780 domain-containing protein	-
QMB36_RS03970 (QMB36_03970)	-	880080..880541 (+)	462	WP_054092019.1	hypothetical protein	-
QMB36_RS03975 (QMB36_03975)	yacG	880668..880877 (-)	210	WP_002552020.1	DNA gyrase inhibitor YacG	-
QMB36_RS03980 (QMB36_03980)	coaE	880874..881497 (-)	624	WP_004415092.1	dephospho-CoA kinase	-
QMB36_RS03985 (QMB36_03985)	pilD	881494..882366 (-)	873	WP_054092017.1	A24 family peptidase	Machinery gene
QMB36_RS03990 (QMB36_03990)	pilC	882368..883585 (-)	1218	WP_032654583.1	type II secretion system F family protein	Machinery gene
QMB36_RS03995 (QMB36_03995)	pilB	883588..885282 (-)	1695	WP_003406565.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QMB36_RS04000 (QMB36_04000)	-	885506..885934 (+)	429	WP_003406568.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
QMB36_RS26520	-	886235..886342 (-)	108	Protein_788	transcriptional regulator	-
QMB36_RS04005 (QMB36_04005)	-	886508..886924 (+)	417	WP_233902709.1	glutathione binding-like protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31969.12 Da
• Isoelectric Point: 8.3734

>NTDB_id=831017 QMB36_RS03985 WP_054092017.1 881494..882366(-) (pilD) [Pseudomonas syringae pv. syringae strain B48]
MSLLDLLASSPLAFVTTCCILGLIIGSFLNVIVYRLPIMMERDWKAQSRELLGLPAEPDQPVFNLNRPRSSCPHCAHKIR
PWENLPVISYLLLRGKCSQCKAPISKRYPLVELTCAVLSAYVAWHFGFGWQAAAMLVLGWGLLAMSLIDADHQLLPDSLV
LPLLWLGLIVNAFGLFTSLNDALWGAVAGYLALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSLVG
AVLGVIMMRVRRVESGTPIPFGPYLAIAGWIALLWGGQITDSYMQFAGFR

Nucleotide

• Length: 873 bp

>NTDB_id=831017 QMB36_RS03985 WP_054092017.1 881494..882366(-) (pilD) [Pseudomonas syringae pv. syringae strain B48]
ATGTCCCTCCTCGACCTCCTGGCCAGCTCACCCCTGGCCTTCGTCACCACCTGCTGCATTCTCGGCCTGATCATCGGAAG
CTTCCTCAACGTGATCGTCTATCGCCTGCCAATAATGATGGAGCGCGACTGGAAAGCCCAATCCCGAGAACTGCTCGGCC
TGCCTGCTGAACCCGATCAACCCGTCTTCAATCTGAACCGCCCCCGTTCCAGCTGCCCGCATTGCGCACACAAAATCCGC
CCTTGGGAGAACCTGCCGGTGATCAGCTATCTGCTGCTGCGTGGTAAATGCTCGCAGTGCAAAGCGCCGATCAGCAAACG
CTACCCGCTGGTCGAGCTGACCTGCGCAGTGTTGTCGGCCTATGTGGCTTGGCATTTCGGTTTTGGCTGGCAGGCGGCGG
CGATGCTGGTATTGGGCTGGGGGCTGCTGGCGATGAGTCTGATCGATGCTGATCACCAGCTGTTACCTGATTCTCTGGTG
CTGCCACTGCTGTGGCTGGGCCTGATCGTCAACGCCTTCGGGCTGTTTACCTCGCTGAACGATGCGCTGTGGGGAGCGGT
GGCCGGCTATCTGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAAGGCATGGGTTATGGCGACT
TCAAGTTGCTGGCCATGCTGGGCGCGTGGGGCGGCTGGCAGGTTTTGCCGTTGACCATCCTGTTATCGTCGCTGGTGGGC
GCGGTGCTCGGGGTGATCATGATGCGTGTCCGCAGGGTCGAAAGCGGTACGCCGATCCCCTTTGGTCCTTATCTGGCCAT
TGCGGGGTGGATCGCTTTGCTCTGGGGTGGTCAAATAACCGACTCTTACATGCAGTTTGCCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.65	97.586	0.514
pilD	Vibrio campbellii strain DS40M4	51.943	97.586	0.507
pilD	Acinetobacter baumannii D1279779	52.19	94.483	0.493
pilD	Acinetobacter nosocomialis M2	51.46	94.483	0.486
pilD	Neisseria gonorrhoeae MS11	51.119	92.414	0.472