Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   QL281_RS09185 Genome accession   NZ_CP125292
Coordinates   1687511..1688200 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain SRCM117797     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1682511..1693200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QL281_RS09150 (QL281_09150) flgN 1682691..1683173 (-) 483 WP_041351273.1 flagellar protein FlgN -
  QL281_RS09155 (QL281_09155) flgM 1683189..1683455 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  QL281_RS09160 (QL281_09160) yvyF 1683536..1683955 (-) 420 WP_041351272.1 TIGR03826 family flagellar region protein -
  QL281_RS09165 (QL281_09165) comFC 1684029..1684751 (-) 723 WP_041351271.1 comF operon protein ComFC Machinery gene
  QL281_RS09170 (QL281_09170) comFB 1684715..1685011 (-) 297 WP_003227989.1 late competence protein ComFB -
  QL281_RS09175 (QL281_09175) comFA 1685071..1686462 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  QL281_RS09180 (QL281_09180) fakBA 1686568..1687413 (-) 846 WP_003244125.1 DegV family protein -
  QL281_RS09185 (QL281_09185) degU 1687511..1688200 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QL281_RS09190 (QL281_09190) degS 1688283..1689440 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  QL281_RS09195 (QL281_09195) yvyE 1689657..1690310 (+) 654 WP_003227979.1 YigZ family protein -
  QL281_RS09200 (QL281_09200) tagV 1690310..1691485 (+) 1176 WP_017695311.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  QL281_RS09205 (QL281_09205) tagO 1691558..1692634 (-) 1077 WP_242304421.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=830902 QL281_RS09185 WP_003219701.1 1687511..1688200(-) (degU) [Bacillus subtilis strain SRCM117797]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=830902 QL281_RS09185 WP_003219701.1 1687511..1688200(-) (degU) [Bacillus subtilis strain SRCM117797]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1