Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   QL281_RS09175 Genome accession   NZ_CP125292
Coordinates   1685071..1686462 (-) Length   463 a.a.
NCBI ID   WP_003243962.1    Uniprot ID   A0AAE2SL32
Organism   Bacillus subtilis strain SRCM117797     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1680071..1691462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QL281_RS09140 (QL281_09140) flgL 1680242..1681138 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  QL281_RS09145 (QL281_09145) flgK 1681149..1682672 (-) 1524 WP_041351274.1 flagellar hook-associated protein FlgK -
  QL281_RS09150 (QL281_09150) flgN 1682691..1683173 (-) 483 WP_041351273.1 flagellar protein FlgN -
  QL281_RS09155 (QL281_09155) flgM 1683189..1683455 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  QL281_RS09160 (QL281_09160) yvyF 1683536..1683955 (-) 420 WP_041351272.1 TIGR03826 family flagellar region protein -
  QL281_RS09165 (QL281_09165) comFC 1684029..1684751 (-) 723 WP_041351271.1 comF operon protein ComFC Machinery gene
  QL281_RS09170 (QL281_09170) comFB 1684715..1685011 (-) 297 WP_003227989.1 late competence protein ComFB -
  QL281_RS09175 (QL281_09175) comFA 1685071..1686462 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  QL281_RS09180 (QL281_09180) fakBA 1686568..1687413 (-) 846 WP_003244125.1 DegV family protein -
  QL281_RS09185 (QL281_09185) degU 1687511..1688200 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QL281_RS09190 (QL281_09190) degS 1688283..1689440 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  QL281_RS09195 (QL281_09195) yvyE 1689657..1690310 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52565.63 Da        Isoelectric Point: 10.0082

>NTDB_id=830901 QL281_RS09175 WP_003243962.1 1685071..1686462(-) (comFA) [Bacillus subtilis strain SRCM117797]
MNVPVEKNSSFSKELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRRYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWKEENESNWKSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFKGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESSIFTESALVQIAGRTGRHKEYADGDVIYFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=830901 QL281_RS09175 WP_003243962.1 1685071..1686462(-) (comFA) [Bacillus subtilis strain SRCM117797]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCAAAAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGAGATATAGATGTAATAGGTGCGGACAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGAAAGAGGAAAATGA
ATCAAACTGGAAGTCTATTAAGCTGACATGGGATGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGACT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAAAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAAGTGCAAACGGGTGTA
CTAGGAGCGGAATCGTCTATCTTTACTGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTACTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-423)

Type III restriction enzyme, res subunit (ResIII)

(120-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

100

100

1