Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   QL281_RS02790 Genome accession   NZ_CP125292
Coordinates   501215..501598 (-) Length   127 a.a.
NCBI ID   WP_041334965.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM117797     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 496215..506598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QL281_RS02750 (QL281_02750) sinI 497155..497328 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  QL281_RS02755 (QL281_02755) sinR 497362..497697 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  QL281_RS02760 (QL281_02760) tasA 497790..498575 (-) 786 WP_017696201.1 biofilm matrix protein TasA -
  QL281_RS02765 (QL281_02765) sipW 498640..499212 (-) 573 WP_072557060.1 signal peptidase I -
  QL281_RS02770 (QL281_02770) tapA 499196..499951 (-) 756 WP_017696199.1 amyloid fiber anchoring/assembly protein TapA -
  QL281_RS02775 (QL281_02775) yqzG 500222..500548 (+) 327 WP_026113671.1 YqzG/YhdC family protein -
  QL281_RS02780 (QL281_02780) spoIIT 500590..500769 (-) 180 WP_014480252.1 YqzE family protein -
  QL281_RS02785 (QL281_02785) comGG 500840..501214 (-) 375 WP_032726157.1 ComG operon protein ComGG Machinery gene
  QL281_RS02790 (QL281_02790) comGF 501215..501598 (-) 384 WP_041334965.1 ComG operon protein ComGF Machinery gene
  QL281_RS02795 (QL281_02795) comGE 501624..501971 (-) 348 WP_041334967.1 ComG operon protein 5 Machinery gene
  QL281_RS02800 (QL281_02800) comGD 501955..502386 (-) 432 WP_041334970.1 comG operon protein ComGD Machinery gene
  QL281_RS02805 (QL281_02805) comGC 502376..502672 (-) 297 WP_041334973.1 comG operon protein ComGC Machinery gene
  QL281_RS02810 (QL281_02810) comGB 502686..503723 (-) 1038 WP_041334977.1 comG operon protein ComGB Machinery gene
  QL281_RS02815 (QL281_02815) comGA 503710..504780 (-) 1071 WP_017696192.1 competence protein ComGA Machinery gene
  QL281_RS02820 (QL281_02820) corA 505190..506143 (-) 954 WP_017696189.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14319.42 Da        Isoelectric Point: 6.2112

>NTDB_id=830877 QL281_RS02790 WP_041334965.1 501215..501598(-) (comGF) [Bacillus subtilis strain SRCM117797]
MLISGSLAAIFHLFLSRQQEHDGFTQQEWMISIEQMMNECKESQAVKTAEHGSVLICTNLSGQDIRFDIYHSMIRKRVDG
KGHVPILDHITAMKADFVNGVVLLKIESEDQKVYQTAFPVYSYLGGG

Nucleotide


Download         Length: 384 bp        

>NTDB_id=830877 QL281_RS02790 WP_041334965.1 501215..501598(-) (comGF) [Bacillus subtilis strain SRCM117797]
TTGCTCATATCAGGATCGTTAGCTGCGATTTTCCATCTGTTTTTGTCTCGACAGCAGGAACATGACGGTTTCACACAGCA
AGAATGGATGATTTCAATAGAACAGATGATGAATGAATGCAAGGAGTCACAGGCAGTTAAGACAGCCGAGCATGGGAGCG
TGTTAATCTGCACCAATCTTTCCGGGCAAGACATCCGTTTTGACATTTATCATTCAATGATAAGAAAAAGAGTGGATGGC
AAAGGGCATGTTCCGATTTTAGATCATATTACTGCCATGAAAGCTGATTTTGTAAATGGTGTTGTTTTGCTGAAAATTGA
GAGTGAGGACCAAAAAGTGTATCAAACTGCTTTTCCAGTCTATTCGTATTTAGGAGGGGGGTGA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(16-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Bacillus subtilis subsp. subtilis str. 168

97.638

100

0.976