Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   QL281_RS02810 Genome accession   NZ_CP125292
Coordinates   502686..503723 (-) Length   345 a.a.
NCBI ID   WP_041334977.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM117797     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 497686..508723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QL281_RS02760 (QL281_02760) tasA 497790..498575 (-) 786 WP_017696201.1 biofilm matrix protein TasA -
  QL281_RS02765 (QL281_02765) sipW 498640..499212 (-) 573 WP_072557060.1 signal peptidase I -
  QL281_RS02770 (QL281_02770) tapA 499196..499951 (-) 756 WP_017696199.1 amyloid fiber anchoring/assembly protein TapA -
  QL281_RS02775 (QL281_02775) yqzG 500222..500548 (+) 327 WP_026113671.1 YqzG/YhdC family protein -
  QL281_RS02780 (QL281_02780) spoIIT 500590..500769 (-) 180 WP_014480252.1 YqzE family protein -
  QL281_RS02785 (QL281_02785) comGG 500840..501214 (-) 375 WP_032726157.1 ComG operon protein ComGG Machinery gene
  QL281_RS02790 (QL281_02790) comGF 501215..501598 (-) 384 WP_041334965.1 ComG operon protein ComGF Machinery gene
  QL281_RS02795 (QL281_02795) comGE 501624..501971 (-) 348 WP_041334967.1 ComG operon protein 5 Machinery gene
  QL281_RS02800 (QL281_02800) comGD 501955..502386 (-) 432 WP_041334970.1 comG operon protein ComGD Machinery gene
  QL281_RS02805 (QL281_02805) comGC 502376..502672 (-) 297 WP_041334973.1 comG operon protein ComGC Machinery gene
  QL281_RS02810 (QL281_02810) comGB 502686..503723 (-) 1038 WP_041334977.1 comG operon protein ComGB Machinery gene
  QL281_RS02815 (QL281_02815) comGA 503710..504780 (-) 1071 WP_017696192.1 competence protein ComGA Machinery gene
  QL281_RS02820 (QL281_02820) corA 505190..506143 (-) 954 WP_017696189.1 magnesium transporter CorA -
  QL281_RS02825 (QL281_02825) yqhB 506285..507613 (+) 1329 WP_017696188.1 hemolysin family protein -
  QL281_RS02830 (QL281_02830) rsbRD 507666..508502 (-) 837 WP_017696187.1 RsbT co-antagonist protein RsbRD -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 39874.33 Da        Isoelectric Point: 9.8616

>NTDB_id=830881 QL281_RS02810 WP_041334977.1 502686..503723(-) (comGB) [Bacillus subtilis strain SRCM117797]
MKKIRKTWPLKDQARLLKRLGEMTASGYTLLDGLRLMELQMNKKQSADLTDTVTRLREGAPFYQVLKRLSFHKEAVGICY
FAETHGELPASMIQSGELLERKIAQADQLKRVLRYPLFLIFTVAVMFYMLQSIIIPQFSGIYQSMNMETSRSTDMLFAFF
QHIDLVIILLILFSAGIGIYYWLVFKKKSPARQMLICVRIPLIGKLVKLFNSYFFSLQLSSLLKSGLSIYDSLNAFKHQT
FLPFYRCEAEQLIERLKAGESIEAAICGSPFYEADFSKVISHGQLSGRLDRELFTYSQFILQRLEHKAQKWTGILQPMIY
GFVAAMILLVYLSMLVPMYQMMNQM

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=830881 QL281_RS02810 WP_041334977.1 502686..503723(-) (comGB) [Bacillus subtilis strain SRCM117797]
ATGAAAAAGATTAGAAAAACCTGGCCGTTAAAGGATCAGGCCCGGTTATTAAAGCGGCTCGGAGAAATGACGGCAAGCGG
ATATACACTTCTGGATGGATTGCGACTGATGGAACTTCAGATGAATAAGAAGCAGTCAGCTGACTTGACTGACACGGTCA
CTCGTTTGAGGGAAGGGGCTCCGTTTTATCAAGTATTAAAGCGTTTGTCATTTCATAAGGAAGCTGTAGGTATTTGTTAT
TTTGCTGAAACACATGGTGAACTGCCTGCTTCCATGATCCAGAGCGGAGAGCTGCTTGAACGAAAAATTGCACAGGCAGA
CCAGCTGAAAAGGGTGCTGCGCTATCCGCTTTTCCTCATCTTCACCGTTGCTGTCATGTTTTATATGTTACAGTCCATCA
TCATTCCTCAATTTTCCGGTATCTATCAATCGATGAATATGGAAACCTCACGTTCAACCGATATGCTTTTTGCTTTTTTT
CAGCATATTGATCTTGTGATCATTTTGCTGATTCTTTTTTCAGCTGGTATCGGGATTTATTACTGGCTTGTGTTTAAGAA
AAAATCACCTGCCAGGCAAATGCTTATTTGTGTCAGGATTCCTTTGATTGGAAAGCTTGTCAAGCTGTTTAACAGCTACT
TTTTTTCTTTGCAGCTAAGCAGCCTTTTAAAATCAGGCCTCTCCATTTATGACAGCCTTAATGCATTTAAACATCAAACG
TTTCTCCCTTTCTACCGCTGCGAGGCTGAACAATTGATTGAACGGCTAAAAGCCGGTGAGTCAATTGAAGCCGCTATTTG
TGGAAGCCCTTTTTATGAAGCTGATTTTTCAAAAGTCATATCTCACGGCCAGCTGAGCGGCCGATTGGATCGAGAGCTTT
TCACATACAGCCAATTCATATTACAGCGGCTGGAACACAAAGCGCAAAAATGGACAGGCATCCTTCAGCCAATGATTTAT
GGATTTGTTGCAGCGATGATCTTACTTGTGTATTTATCTATGCTTGTGCCTATGTATCAGATGATGAATCAAATGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(17-136)

Type II secretion system (T2SS), protein F (T2SSF)

(215-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Bacillus subtilis subsp. subtilis str. 168

95.666

93.623

0.896