Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   QL280_RS09395 Genome accession   NZ_CP125291
Coordinates   1828549..1829502 (-) Length   317 a.a.
NCBI ID   WP_000345101.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 105_Kz     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1823549..1834502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QL280_RS09365 (QL280_09365) - 1824310..1824933 (-) 624 WP_000932660.1 hypothetical protein -
  QL280_RS09370 (QL280_09370) jag 1824984..1825970 (-) 987 WP_000260018.1 RNA-binding cell elongation regulator Jag/EloR -
  QL280_RS09375 (QL280_09375) - 1825989..1826813 (-) 825 WP_000727904.1 membrane protein insertase YidC -
  QL280_RS09380 (QL280_09380) rnpA 1826788..1827159 (-) 372 WP_000739246.1 ribonuclease P protein component -
  QL280_RS09385 (QL280_09385) - 1827176..1827307 (-) 132 WP_000768904.1 hypothetical protein -
  QL280_RS09390 (QL280_09390) - 1827308..1828498 (-) 1191 WP_000167766.1 acetate kinase -
  QL280_RS09395 (QL280_09395) comYH 1828549..1829502 (-) 954 WP_000345101.1 class I SAM-dependent methyltransferase Machinery gene
  QL280_RS09400 (QL280_09400) - 1829563..1830157 (-) 595 Protein_1830 methyltransferase domain-containing protein -
  QL280_RS09405 (QL280_09405) comGG/cglG 1830294..1830707 (-) 414 WP_000265622.1 competence type IV pilus minor pilin ComGG Machinery gene
  QL280_RS09410 (QL280_09410) comGF/cglF 1830685..1831146 (-) 462 WP_000250534.1 competence type IV pilus minor pilin ComGF Machinery gene
  QL280_RS09415 (QL280_09415) comGE/cglE 1831109..1831411 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  QL280_RS09420 (QL280_09420) comGD/cglD 1831374..1831778 (-) 405 WP_000588028.1 competence type IV pilus minor pilin ComGD Machinery gene
  QL280_RS09425 (QL280_09425) comGC/cglC 1831771..1832097 (-) 327 WP_000738636.1 comG operon protein ComGC Machinery gene
  QL280_RS09430 (QL280_09430) comGB/cglB 1832099..1833115 (-) 1017 WP_074017570.1 competence type IV pilus assembly protein ComGB Machinery gene
  QL280_RS09435 (QL280_09435) comGA/cglA/cilD 1833063..1834004 (-) 942 WP_000249552.1 competence type IV pilus ATPase ComGA Machinery gene
  QL280_RS09440 (QL280_09440) - 1834080..1834445 (-) 366 WP_000286415.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35717.95 Da        Isoelectric Point: 4.2995

>NTDB_id=830850 QL280_RS09395 WP_000345101.1 1828549..1829502(-) (comYH) [Streptococcus pneumoniae strain 105_Kz]
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELEQVKDNNQTLKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFKEEEITILEMGSGMGILGATFLTSLTKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYTHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SNLLKVWLKEEASLVAMISLPENLFANAKQSKTIFILQKKSEIAVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=830850 QL280_RS09395 WP_000345101.1 1828549..1829502(-) (comYH) [Streptococcus pneumoniae strain 105_Kz]
ATGGATTTTGAAAAAATTGAACAAGCTTATACCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAACAGCATCTATCTGGATGGTGAGACTGAGCTAGAACAGGTCAAAGACAACAATC
AGACCCTTAAGCGTTTAGCACTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAAACA
GAACCCTTGCAGGCCAATCACCAGTTTACACCGGATGCTATTGCTTTACTTTTGGTGTTTATTGTGGAAGAGCTGTTTAA
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGGATGGGAATTTTGGGCGCTACTTTCTTGACCTCGCTTACTAAAA
AGGTGGATTATTTGGGAATGGAAGTGGATGATTTGCTGATTGATTTGGCAGCTAGCATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGTCCACAAATGCTCAAAGAAAGTGATGTGGTCATCAGCGACTTGCCTGTTGG
CTATTATCCTGATGATGCCGTTGCGTCGCGCCATCAAGTTGCTTCTAGTCAAGAACATACTTACACCCATCACTTGCTCA
TGGAACAAGGACTTAAGTACCTCAAGTCAGACGGATACGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCAGTCCTCAA
AGTAATTTGTTGAAAGTCTGGTTGAAAGAGGAGGCAAGTCTGGTTGCTATGATTAGTTTACCTGAAAATCTCTTTGCTAA
TGCTAAACAATCTAAGACTATTTTTATCCTACAGAAGAAAAGTGAAATAGCAGTAGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

54.633

98.738

0.539
  comYH Streptococcus mutans UA159

54.313

98.738

0.536