Detailed information NTG0830696

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QLX61_RS23940
• Genome accession: NZ_CP125288
• Coordinates: 5201708..5202580 (+)
• Length: 290 a.a.
• NCBI ID: WP_034037193.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain SF416
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5196708..5207580

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QLX61_RS23925 (QLX61_23920)	-	5198091..5198555 (-)	465	WP_023129290.1	pilin	-
QLX61_RS23930 (QLX61_23925)	pilB	5198786..5200486 (+)	1701	WP_003122078.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QLX61_RS23935 (QLX61_23930)	pilC	5200490..5201707 (+)	1218	WP_003161763.1	type II secretion system F family protein	Machinery gene
QLX61_RS23940 (QLX61_23935)	pilD	5201708..5202580 (+)	873	WP_034037193.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
QLX61_RS23945 (QLX61_23940)	coaE	5202577..5203188 (+)	612	WP_003112838.1	dephospho-CoA kinase	-
QLX61_RS23950 (QLX61_23945)	yacG	5203185..5203385 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
QLX61_RS23955 (QLX61_23950)	-	5203422..5203631 (-)	210	WP_003094660.1	hypothetical protein	-
QLX61_RS23960 (QLX61_23955)	-	5203737..5204426 (-)	690	WP_003094662.1	energy-coupling factor ABC transporter permease	-
QLX61_RS23965 (QLX61_23960)	-	5204423..5204893 (-)	471	WP_003103866.1	hypothetical protein	-
QLX61_RS23970 (QLX61_23965)	-	5204890..5205315 (-)	426	WP_003103865.1	GNAT family N-acetyltransferase	-
QLX61_RS23975 (QLX61_23970)	-	5205448..5206077 (+)	630	WP_003094668.1	DUF1780 domain-containing protein	-
QLX61_RS23980 (QLX61_23975)	-	5206074..5206523 (+)	450	WP_003094670.1	MOSC domain-containing protein	-
QLX61_RS23985 (QLX61_23980)	-	5206549..5206719 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31783.78 Da
• Isoelectric Point: 7.7068

>NTDB_id=830696 QLX61_RS23940 WP_034037193.1 5201708..5202580(+) (pilD) [Pseudomonas aeruginosa strain SF416]
MTLLDYLASHPLAFVLCTILLGLLVGSFLNVVAHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLASYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALLGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=830696 QLX61_RS23940 WP_034037193.1 5201708..5202580(+) (pilD) [Pseudomonas aeruginosa strain SF416]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAATGTCGTCGCGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGCCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTAGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCTTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.357	96.552	0.534
pilD	Vibrio campbellii strain DS40M4	52.65	97.586	0.514
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	50.19	90.69	0.455