Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   QLX50_RS14440 Genome accession   NZ_CP125283
Coordinates   2951172..2951816 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain IFST-221     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2946172..2956816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLX50_RS14405 (QLX50_14405) - 2947357..2947788 (+) 432 WP_282999831.1 Na(+)/H(+) antiporter subunit B -
  QLX50_RS14410 (QLX50_14410) - 2947788..2948129 (+) 342 WP_082998530.1 Na(+)/H(+) antiporter subunit C -
  QLX50_RS14415 (QLX50_14415) - 2948122..2949603 (+) 1482 WP_032876804.1 Na+/H+ antiporter subunit D -
  QLX50_RS14420 (QLX50_14420) - 2949609..2950085 (+) 477 WP_007408672.1 Na+/H+ antiporter subunit E -
  QLX50_RS14425 (QLX50_14425) - 2950085..2950369 (+) 285 WP_017419420.1 Na(+)/H(+) antiporter subunit F1 -
  QLX50_RS14430 (QLX50_14430) mnhG 2950353..2950727 (+) 375 WP_007613429.1 monovalent cation/H(+) antiporter subunit G -
  QLX50_RS14435 (QLX50_14435) - 2950767..2951150 (-) 384 WP_007613430.1 hotdog fold thioesterase -
  QLX50_RS14440 (QLX50_14440) comA 2951172..2951816 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  QLX50_RS14445 (QLX50_14445) comP 2951897..2954188 (-) 2292 WP_282999838.1 histidine kinase Regulator
  QLX50_RS14450 (QLX50_14450) comX 2954200..2954364 (-) 165 WP_007613432.1 competence pheromone ComX -
  QLX50_RS14455 (QLX50_14455) - 2954364..2955275 (-) 912 WP_007613433.1 polyprenyl synthetase family protein -
  QLX50_RS14460 (QLX50_14460) degQ 2955427..2955567 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  QLX50_RS14465 (QLX50_14465) - 2956033..2956374 (+) 342 WP_044801746.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=830635 QLX50_RS14440 WP_003152052.1 2951172..2951816(-) (comA) [Bacillus velezensis strain IFST-221]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=830635 QLX50_RS14440 WP_003152052.1 2951172..2951816(-) (comA) [Bacillus velezensis strain IFST-221]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
TGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864