Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   H7680_RS04400 Genome accession   NZ_AP023394
Coordinates   871369..872598 (+) Length   409 a.a.
NCBI ID   WP_014612216.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain 159     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 866369..877598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7680_RS04375 (SDSE159_08290) - 866991..868268 (-) 1278 WP_012766848.1 hydroxymethylglutaryl-CoA reductase, degradative -
  H7680_RS04380 (SDSE159_08300) - 868249..869430 (-) 1182 WP_003062183.1 hydroxymethylglutaryl-CoA synthase -
  H7680_RS04385 (SDSE159_08310) - 869648..870487 (+) 840 WP_003054196.1 thymidylate synthase -
  H7680_RS04390 (SDSE159_08320) - 870568..871065 (+) 498 WP_003054187.1 dihydrofolate reductase -
  H7680_RS04395 (SDSE159_08330) - 871085..871255 (+) 171 WP_003054200.1 hypothetical protein -
  H7680_RS04400 (SDSE159_08340) clpX 871369..872598 (+) 1230 WP_014612216.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  H7680_RS04405 (SDSE159_08350) yihA 872608..873207 (+) 600 WP_184006828.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  H7680_RS04410 (SDSE159_08360) - 873351..874139 (+) 789 WP_138128043.1 hypothetical protein -
  H7680_RS04415 (SDSE159_08370) clpC 874150..876249 (-) 2100 WP_014612218.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  H7680_RS04420 - 876747..877154 (-) 408 Protein_823 IS30 family transposase -
  H7680_RS04425 - 877148..877324 (+) 177 Protein_824 IS30 family transposase -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45033.52 Da        Isoelectric Point: 4.5866

>NTDB_id=83063 H7680_RS04400 WP_014612216.1 871369..872598(+) (clpX) [Streptococcus dysgalactiae subsp. equisimilis strain 159]
MAGSRTNDIKVYCSFCGKSQDEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLTEVPKPKELLEVLNQYVVGQDR
AKRALSVAVYNHYKRVSFTESRDDEDVELQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADYNVERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEDIVKQRLGEKVIGFGQNSRKIDDNASYMQEIISEDIQKFGLIPEFIGRLPVVAALEQLNTSDLIQI
LTEPRNALVKQYQALLSYDGVELAFDKEALEAIANKAIERKTGARGLRSIIEETMLDIMFEIPSQEDVTKVRITKAAVEG
KSKPVLETA

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=83063 H7680_RS04400 WP_014612216.1 871369..872598(+) (clpX) [Streptococcus dysgalactiae subsp. equisimilis strain 159]
ATGGCAGGAAGTCGTACAAACGATATTAAAGTATATTGCTCATTTTGTGGTAAGAGCCAAGACGAAGTCAAAAAAATTAT
TGCAGGGAATAATGTTTTTATCTGTAATGAATGTGTGGCTTTGTCACAAGAAATTATTAAAGAAGAGTTGGCAGAAGAAG
TGTTAGCTGACCTAACAGAAGTTCCAAAACCAAAAGAACTCCTTGAGGTTTTAAACCAGTATGTTGTTGGTCAAGATCGT
GCCAAACGTGCTTTATCAGTAGCTGTTTACAATCATTACAAACGCGTGTCATTCACGGAAAGTCGTGATGATGAAGATGT
TGAATTGCAAAAATCAAACATTTTAATGATTGGTCCAACAGGTTCAGGAAAGACTTTTCTCGCTCAAACCTTAGCTAAGA
GCTTAAATGTTCCTTTTGCGATTGCTGATGCAACCTCACTGACTGAAGCAGGGTATGTTGGAGAAGATGTGGAAAATATT
CTTCTCAAGCTTATCCAAGCAGCTGATTATAATGTGGAACGAGCAGAGCGTGGTATCATCTATGTCGATGAAATTGATAA
GATTGCTAAAAAAGGTGAAAATGTGTCCATCACACGTGATGTTTCTGGTGAGGGAGTTCAACAGGCCTTGCTAAAAATCA
TTGAAGGAACGGTTGCTAGTGTTCCTCCTCAAGGCGGTCGTAAGCATCCAAATCAGGAAATGATTCAAATTGATACCAAG
AATATCTTGTTTATTGTTGGGGGAGCCTTTGATGGCATTGAAGACATTGTCAAACAACGTTTAGGAGAAAAAGTCATTGG
TTTTGGTCAAAACAGCCGAAAAATCGATGACAATGCTTCTTATATGCAAGAGATTATTTCAGAAGATATCCAAAAATTTG
GTCTTATCCCAGAGTTTATTGGACGCTTGCCAGTCGTAGCTGCTCTTGAACAACTAAACACATCAGATTTGATTCAAATT
TTGACGGAACCAAGAAATGCCCTAGTCAAGCAATATCAGGCTCTTCTTTCTTACGATGGTGTCGAATTGGCATTTGATAA
GGAAGCCTTAGAAGCCATTGCAAATAAAGCCATTGAGCGTAAGACAGGCGCGCGTGGTCTTCGTTCTATTATCGAAGAAA
CGATGTTAGACATTATGTTTGAAATTCCAAGCCAAGAAGATGTCACAAAAGTGCGTATCACCAAGGCTGCTGTCGAAGGC
AAGTCAAAACCCGTTTTAGAGACAGCTTAA

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(110-305)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(312-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

89.242

100

0.892
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.853

98.044

0.577

Multiple sequence alignment