Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   QLX50_RS12025 Genome accession   NZ_CP125283
Coordinates   2490682..2493033 (-) Length   783 a.a.
NCBI ID   WP_044802530.1    Uniprot ID   -
Organism   Bacillus velezensis strain IFST-221     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2485682..2498033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLX50_RS11990 (QLX50_11990) - 2486048..2486386 (-) 339 WP_007408270.1 YqxA family protein -
  QLX50_RS11995 (QLX50_11995) - 2486403..2487596 (-) 1194 WP_044802531.1 stage II sporulation protein P -
  QLX50_RS12000 (QLX50_12000) gpr 2487664..2488770 (-) 1107 WP_007408268.1 GPR endopeptidase -
  QLX50_RS12005 (QLX50_12005) rpsT 2488973..2489239 (+) 267 WP_003152876.1 30S ribosomal protein S20 -
  QLX50_RS12010 (QLX50_12010) holA 2489256..2490297 (-) 1042 Protein_2318 DNA polymerase III subunit delta -
  QLX50_RS12015 (QLX50_12015) - 2490337..2490488 (-) 152 Protein_2319 hypothetical protein -
  QLX50_RS12020 (QLX50_12020) - 2490529..2490663 (+) 135 WP_003152870.1 YqzM family protein -
  QLX50_RS12025 (QLX50_12025) comEC 2490682..2493033 (-) 2352 WP_044802530.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QLX50_RS12030 (QLX50_12030) - 2493034..2493603 (-) 570 WP_003152868.1 ComE operon protein 2 -
  QLX50_RS12035 (QLX50_12035) comEA 2493670..2494284 (-) 615 WP_044802529.1 helix-hairpin-helix domain-containing protein Machinery gene
  QLX50_RS12040 (QLX50_12040) comER 2494343..2495164 (+) 822 WP_012118027.1 late competence protein ComER -
  QLX50_RS12045 (QLX50_12045) - 2495233..2495970 (-) 738 WP_282999704.1 class I SAM-dependent methyltransferase -
  QLX50_RS12050 (QLX50_12050) rsfS 2495967..2496323 (-) 357 WP_007408260.1 ribosome silencing factor -
  QLX50_RS12055 (QLX50_12055) yqeK 2496341..2496901 (-) 561 WP_014418422.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  QLX50_RS12060 (QLX50_12060) - 2496891..2497460 (-) 570 WP_007408258.1 nicotinate-nucleotide adenylyltransferase -
  QLX50_RS12065 (QLX50_12065) yhbY 2497471..2497761 (-) 291 WP_007408257.1 ribosome assembly RNA-binding protein YhbY -

Sequence

Protein


Download         Length: 783 a.a.        Molecular weight: 86877.88 Da        Isoelectric Point: 9.2508

>NTDB_id=830624 QLX50_RS12025 WP_044802530.1 2490682..2493033(-) (comEC) [Bacillus velezensis strain IFST-221]
MKYKYLLLPLAAVSATAGIAAAHVFWVLLLFLLYLLFIILKTKQYAPVIVCLVSFCVYFFLYTVCDAANVTRYQAGSYTE
QAVITNIPKVDGAKISAVIRTHDKEKWAASYKIRSLEEKRLIEQLEPGMRCTFTGSLEQPAHATVPGGFDYKEYLYSQQI
HWLFSVTSIQQCEKSKQPLFKLLNIRKNLISIIRNHVPESSAGIVEALTLGERFSIEDDILSAYQNLGVVHLMAISGMHV
GLITAGLFYALIRIGLTREKAGILLLLFLPVYTLLSGAAPSVLRASLMLGFYIAGTLVKRGIHSSVALSLSYLLLLLFNP
YFLWQAGFQLSFAVSASLILSSSILKKAGKSRLAGLAMASFIAELSSLPFLLYHFQQISLVSFPMNMVMVPFYTLFVIPV
SVIGFLLLLLSRQMGECLFYMFDLVMKPVHDFITYAASIDLFTMIVSKPDFVSLLLLAVSVFTLFAALEKRGFLKLRKSA
LFFCAVLAYLICRPYFSPWGEADMLDIGQGDSLFISAPHRKGTVMVDTGGVVAYPGESWKEKRHPYSIGEKVLIPFLNGK
GVKKLDALILTHADQDHIGEAGVLIKNHRVKRLIVPVGFVKEPKDQNILNMAKENNIPVAEAKRGDTITAGDLQFQVLSP
ESSDGRSKNDSSLVLWTVLGGVSWLLTGDLESDGETEVLKTYPKLKADILKAGHHGSKSSTSEAFLKQLQPEAALISAGK
ENRYHHPHEEVLDRLKAYSVNVLRTDISGTIQYRFKKGAGTFSVFPPYDIEETRAQEVKKTAD

Nucleotide


Download         Length: 2352 bp        

>NTDB_id=830624 QLX50_RS12025 WP_044802530.1 2490682..2493033(-) (comEC) [Bacillus velezensis strain IFST-221]
ATGAAATATAAATACCTTCTTCTGCCTCTGGCGGCGGTTTCTGCAACTGCGGGAATTGCCGCCGCTCATGTCTTCTGGGT
TCTGCTCCTTTTTCTTCTGTATCTTCTCTTTATTATTTTAAAAACAAAGCAGTATGCTCCGGTTATCGTCTGCCTCGTTT
CTTTTTGTGTTTATTTCTTTCTTTATACGGTTTGTGACGCTGCGAATGTAACGCGGTATCAGGCCGGCAGTTATACTGAA
CAGGCCGTCATCACTAATATTCCGAAAGTTGACGGAGCGAAAATATCAGCTGTTATCCGTACACATGACAAGGAAAAATG
GGCGGCTTCGTACAAAATCCGGTCACTTGAGGAAAAGAGACTCATTGAACAGCTCGAACCGGGGATGCGCTGCACGTTTA
CAGGCTCTCTGGAACAGCCTGCACATGCGACGGTTCCCGGAGGTTTTGATTATAAGGAATATCTTTACTCTCAGCAGATT
CACTGGTTATTTTCCGTGACTTCCATTCAGCAGTGTGAAAAATCCAAACAGCCGCTGTTTAAACTGCTGAACATCAGAAA
AAATTTGATTTCGATCATTCGGAATCACGTGCCTGAATCTTCCGCCGGAATTGTTGAAGCGCTGACCTTAGGTGAAAGAT
TTTCTATAGAGGACGATATACTGAGTGCATATCAAAATTTGGGAGTCGTTCATTTAATGGCGATTTCCGGAATGCATGTC
GGTCTTATTACGGCGGGATTATTTTATGCTCTGATCAGAATCGGGCTGACAAGAGAAAAAGCGGGAATTTTGCTGCTGCT
GTTTTTGCCGGTGTATACGCTGCTGAGCGGTGCCGCCCCATCCGTATTGCGCGCATCCCTCATGCTGGGATTTTATATCG
CCGGAACTCTTGTTAAACGCGGTATTCATTCCTCTGTTGCATTGTCCCTGTCTTATCTGCTGCTCTTGCTGTTTAATCCT
TACTTCCTTTGGCAGGCGGGCTTCCAGCTTTCCTTTGCGGTAAGCGCCTCTTTAATTCTGTCATCCTCCATTTTAAAGAA
AGCAGGGAAAAGCAGACTTGCCGGGCTTGCGATGGCTTCATTCATTGCGGAGCTCAGCTCACTTCCGTTTCTTCTCTATC
ATTTTCAGCAGATTTCACTTGTCAGTTTTCCGATGAATATGGTGATGGTGCCATTTTATACGTTATTTGTCATTCCGGTT
TCTGTCATCGGTTTCCTTCTTCTTTTACTTTCAAGGCAGATGGGAGAATGTTTGTTTTATATGTTCGACCTTGTGATGAA
GCCTGTGCATGATTTCATTACATATGCGGCATCCATTGATTTATTTACTATGATTGTGTCAAAGCCTGACTTTGTTTCCC
TTCTTCTGCTTGCGGTTTCCGTTTTTACGCTTTTTGCGGCTTTGGAAAAGAGAGGTTTTTTAAAACTCAGGAAATCGGCT
CTTTTTTTCTGCGCGGTTTTGGCTTATTTAATATGCCGTCCGTATTTCAGTCCATGGGGAGAAGCGGATATGCTTGATAT
CGGGCAGGGAGACTCACTGTTTATAAGCGCGCCGCACCGCAAAGGGACTGTAATGGTTGATACAGGGGGAGTGGTTGCTT
ATCCCGGAGAATCATGGAAAGAAAAACGCCACCCGTATTCTATCGGCGAGAAGGTTTTGATTCCGTTCTTAAACGGAAAA
GGGGTGAAAAAGCTGGATGCGCTGATTTTAACCCATGCGGATCAAGATCACATCGGAGAAGCCGGAGTGTTAATCAAAAA
TCATAGAGTCAAACGGTTAATTGTCCCCGTGGGATTCGTAAAAGAACCGAAAGATCAGAACATATTAAATATGGCGAAAG
AAAACAACATTCCCGTTGCCGAAGCAAAGCGGGGCGACACCATTACAGCCGGTGATCTTCAGTTTCAGGTGCTGTCTCCG
GAGTCGTCTGACGGAAGGAGTAAAAATGATTCGTCACTGGTGCTTTGGACGGTTTTAGGCGGAGTGAGCTGGCTTTTGAC
GGGAGATTTAGAATCGGACGGCGAAACGGAAGTGCTGAAAACGTATCCGAAACTGAAGGCTGATATATTGAAGGCGGGTC
ATCACGGCAGCAAAAGCTCTACGAGTGAAGCCTTTTTGAAGCAGCTTCAGCCAGAAGCAGCGCTGATTTCAGCAGGAAAA
GAGAATCGATACCATCATCCGCATGAAGAAGTGCTGGATCGTTTGAAGGCGTACTCTGTAAATGTGCTTCGCACCGATAT
CAGCGGAACGATTCAATACAGATTTAAAAAAGGTGCCGGAACGTTTTCCGTCTTCCCTCCATATGATATAGAAGAAACCA
GGGCGCAAGAAGTAAAAAAGACTGCCGATTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(25-171)

Metallo-beta-lactamase superfamily (Lactamase_B)

(508-719)

Competence protein (Competence)

(208-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Bacillus subtilis subsp. subtilis str. 168

56.865

98.595

0.561