Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   QLH34_RS13570 Genome accession   NZ_CP125279
Coordinates   2708321..2708656 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain FLU-1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2703321..2713656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLH34_RS13550 (QLH34_13550) gcvT 2703927..2705027 (-) 1101 WP_025284994.1 glycine cleavage system aminomethyltransferase GcvT -
  QLH34_RS13555 (QLH34_13555) - 2705451..2707121 (+) 1671 WP_132105375.1 SNF2-related protein -
  QLH34_RS13560 (QLH34_13560) - 2707143..2707937 (+) 795 WP_208480294.1 YqhG family protein -
  QLH34_RS13565 (QLH34_13565) sinI 2708114..2708287 (+) 174 WP_003153105.1 anti-repressor SinI family protein Regulator
  QLH34_RS13570 (QLH34_13570) sinR 2708321..2708656 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  QLH34_RS13575 (QLH34_13575) - 2708704..2709489 (-) 786 WP_007408329.1 TasA family protein -
  QLH34_RS13580 (QLH34_13580) - 2709554..2710138 (-) 585 WP_015240205.1 signal peptidase I -
  QLH34_RS13585 (QLH34_13585) tapA 2710110..2710781 (-) 672 WP_124692843.1 amyloid fiber anchoring/assembly protein TapA -
  QLH34_RS13590 (QLH34_13590) - 2711040..2711369 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  QLH34_RS13595 (QLH34_13595) - 2711409..2711588 (-) 180 WP_003153093.1 YqzE family protein -
  QLH34_RS13600 (QLH34_13600) comGG 2711645..2712022 (-) 378 WP_015240208.1 competence type IV pilus minor pilin ComGG Machinery gene
  QLH34_RS13605 (QLH34_13605) comGF 2712023..2712523 (-) 501 WP_256994853.1 competence type IV pilus minor pilin ComGF -
  QLH34_RS13610 (QLH34_13610) comGE 2712432..2712746 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  QLH34_RS13615 (QLH34_13615) comGD 2712730..2713167 (-) 438 WP_015240210.1 competence type IV pilus minor pilin ComGD Machinery gene
  QLH34_RS13620 (QLH34_13620) comGC 2713157..2713465 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=830504 QLH34_RS13570 WP_003153104.1 2708321..2708656(+) (sinR) [Bacillus velezensis strain FLU-1]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=830504 QLH34_RS13570 WP_003153104.1 2708321..2708656(+) (sinR) [Bacillus velezensis strain FLU-1]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991