Detailed information NTG0830507

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: R6Z04_RS14965
• Genome accession: NZ_CP139440
• Coordinates: 2812000..2813265 (+)
• Length: 421 a.a.
• NCBI ID: WP_004398500.1
• Uniprot ID: O34528
• Organism: Bacillus subtilis strain GUCC4
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2807000..2818265

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R6Z04_RS14945 (R6Z04_14945)	yrrB	2808371..2808991 (-)	621	WP_010886584.1	tetratricopeptide repeat protein	-
R6Z04_RS14950 (R6Z04_14950)	mnmA	2809077..2810192 (-)	1116	WP_004398509.1	tRNA 2-thiouridine(34) synthase MnmA	-
R6Z04_RS14955 (R6Z04_14955)	iscSA	2810223..2811362 (-)	1140	WP_003246057.1	cysteine desulfurase family protein	-
R6Z04_RS14960 (R6Z04_14960)	cymR	2811381..2811797 (-)	417	WP_003225879.1	cysteine metabolism transcriptional regulator CymR	-
R6Z04_RS14965 (R6Z04_14965)	rarA	2812000..2813265 (+)	1266	WP_004398500.1	replication-associated recombination protein A	Machinery gene
R6Z04_RS14970 (R6Z04_14970)	tcdA	2813307..2814071 (-)	765	WP_009967893.1	ThiF family adenylyltransferase	-
R6Z04_RS14980 (R6Z04_14980)	aspS	2814407..2816185 (-)	1779	WP_003229758.1	aspartate--tRNA ligase	-
R6Z04_RS14985 (R6Z04_14985)	hisS	2816199..2817473 (-)	1275	WP_003229755.1	histidine--tRNA ligase	-
R6Z04_RS14990 (R6Z04_14990)	yrzK	2817855..2818025 (-)	171	WP_004399157.1	YrzK family protein	-

Sequence

Protein

• Length: 421 a.a.
• Molecular weight: 46514.38 Da
• Isoelectric Point: 7.2043

>NTDB_id=830507 R6Z04_RS14965 WP_004398500.1 2812000..2813265(+) (rarA) [Bacillus subtilis strain GUCC4]
MKPLAYRMRPTKIEDIIGQQHLVAEDKIIGRMVQAKHLSSMILYGPPGIGKTSIATAIAGSTSIAFRKLNAVINNKKDME
IVAQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMIILIGATTANPYHAINPAIRSRTQIFELEPLTPELIKQALER
ALHDEHRGLGTYSVSIDDQAMEHFAHGCGGDVRSALNALELAVLSTKESADGEIHITLETAEECLQKKSFSHDKDGDAHY
DVLSAFQKSIRGSDANAALHYLARLIEAGDLESIARRLLVIAYEDIGLASPQAGPRVLNAIQTAERVGFPEARIPLANAV
IELCLSPKSNSAILAIDEALADIRAGKIGDVPKHLKDAHYKGAQELGRGIDYKYPHNYDNGWVEQQYLPDPLKNKQYYKP
KQTGKFESALKQVYDKLMKRK

Nucleotide

• Length: 1266 bp

>NTDB_id=830507 R6Z04_RS14965 WP_004398500.1 2812000..2813265(+) (rarA) [Bacillus subtilis strain GUCC4]
ATGAAGCCATTGGCATATCGGATGCGTCCGACAAAAATAGAGGATATTATCGGCCAGCAGCATCTGGTGGCTGAAGATAA
AATTATTGGCAGAATGGTCCAGGCAAAACATTTGTCATCCATGATTTTGTACGGGCCGCCCGGAATTGGAAAAACATCAA
TCGCAACAGCAATCGCCGGTTCAACAAGTATTGCTTTTCGAAAGCTGAATGCTGTCATTAACAATAAAAAAGATATGGAA
ATCGTAGCTCAGGAAGCCAAGATGTCCGGCCAAGTGATTTTGATTCTGGATGAAGTCCACAGGCTGGATAAAGGAAAACA
GGATTTTCTATTACCCTATTTAGAAAACGGAATGATCATTTTGATCGGAGCAACGACGGCTAACCCGTATCATGCCATTA
ATCCGGCGATCAGAAGCCGGACCCAGATTTTTGAGCTTGAACCGTTAACACCTGAACTGATTAAACAGGCACTGGAACGT
GCGCTCCATGATGAGCATCGGGGCCTTGGCACCTATTCTGTATCCATTGATGATCAGGCGATGGAGCATTTTGCCCACGG
ATGCGGAGGAGATGTCCGCTCCGCTTTAAATGCGCTTGAGCTTGCCGTGTTGTCAACGAAGGAGTCAGCAGACGGTGAAA
TTCACATTACATTAGAAACCGCGGAAGAATGCTTGCAGAAAAAAAGCTTTTCTCACGATAAAGATGGTGACGCGCATTAT
GATGTACTGTCCGCTTTTCAAAAATCAATCCGCGGCTCTGATGCCAACGCTGCTCTTCACTATTTGGCTAGATTAATTGA
AGCCGGTGATCTGGAGAGCATCGCAAGACGATTGCTTGTTATCGCCTATGAGGATATCGGTTTAGCAAGCCCGCAAGCCG
GCCCTAGAGTGCTGAACGCTATTCAGACCGCTGAGCGAGTCGGGTTTCCTGAAGCGCGAATCCCGCTGGCCAACGCAGTT
ATTGAGCTTTGCCTCTCACCGAAATCAAACTCTGCCATTCTGGCAATCGATGAGGCCCTGGCAGATATCAGAGCCGGAAA
AATTGGGGATGTCCCGAAGCATTTAAAAGACGCGCATTATAAAGGAGCTCAGGAATTAGGAAGAGGAATCGACTATAAAT
ACCCGCACAATTACGACAACGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCG
AAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAA

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (172-251)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (8-125)

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-417)

3D structure

• AlphaFold DB: O34528

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	100	100	1