Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   OH685_RS00620 Genome accession   NZ_CP125227
Coordinates   108978..109607 (+) Length   209 a.a.
NCBI ID   WP_068530084.1    Uniprot ID   -
Organism   Acinetobacter pittii strain SO1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 103978..114607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH685_RS00605 (OH685_00600) - 105042..106025 (-) 984 WP_032057360.1 putative solute-binding protein -
  OH685_RS00610 (OH685_00605) - 106105..106920 (-) 816 WP_282463635.1 NAD(P)H-binding protein -
  OH685_RS00615 (OH685_00615) recG 106941..108985 (+) 2045 Protein_108 ATP-dependent DNA helicase RecG -
  OH685_RS00620 (OH685_00620) comF 108978..109607 (+) 630 WP_068530084.1 phosphoribosyltransferase family protein Machinery gene
  OH685_RS00625 (OH685_00625) mutT 109609..110010 (-) 402 WP_002116701.1 NUDIX domain-containing protein -
  OH685_RS00630 (OH685_00630) - 110025..110606 (-) 582 WP_005067248.1 TIGR00730 family Rossman fold protein -
  OH685_RS00635 (OH685_00635) - 110765..111778 (+) 1014 WP_002116978.1 magnesium and cobalt transport protein CorA -
  OH685_RS00640 (OH685_00640) - 111851..112138 (-) 288 WP_005078357.1 STAS domain-containing protein -
  OH685_RS00645 (OH685_00645) - 112150..112791 (-) 642 WP_002116826.1 ABC transporter substrate-binding protein -
  OH685_RS00650 (OH685_00650) - 112818..113498 (-) 681 WP_005067241.1 outer membrane lipid asymmetry maintenance protein MlaD -
  OH685_RS00655 (OH685_00655) mlaE 113498..114274 (-) 777 WP_002117010.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24505.67 Da        Isoelectric Point: 9.6668

>NTDB_id=830418 OH685_RS00620 WP_068530084.1 108978..109607(+) (comF) [Acinetobacter pittii strain SO1]
MFNFLNFQPLIQLFSPCSLCELGMREKYSLCKDCWEQLPWLKQTIQRNNHSVLVACNYAYPVNRIIQQFKYEQKLHYQIL
LGEILKQLKFPKVQAIVPMPISNQRLIERGFNQSLLLANILSRHLKIPVWQPIQRLNEHSQKGLTRLERFENIEQQFLPH
HQEERRYRRVLIIDDVITTGSSVHALSQALKQLGCTSIHTACLAATLKS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=830418 OH685_RS00620 WP_068530084.1 108978..109607(+) (comF) [Acinetobacter pittii strain SO1]
ATGTTTAATTTTTTAAACTTCCAACCTCTTATTCAGTTATTTTCACCTTGCTCATTGTGCGAGTTAGGCATGCGAGAAAA
ATACTCGCTCTGTAAAGACTGTTGGGAACAGCTACCTTGGCTTAAACAAACGATTCAACGTAATAATCACTCTGTTCTTG
TGGCCTGTAATTATGCTTATCCAGTTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAGTTACATTATCAAATCTTA
TTAGGTGAAATTTTAAAACAATTAAAATTTCCCAAGGTACAAGCTATTGTACCCATGCCTATTTCCAATCAGCGTTTAAT
CGAGCGTGGTTTCAATCAATCATTACTACTTGCCAATATCTTAAGCAGACACTTAAAAATACCTGTTTGGCAACCAATCC
AACGTTTAAACGAGCACTCTCAAAAAGGACTTACTCGGCTAGAACGCTTTGAAAATATAGAACAACAATTTTTACCCCAT
CATCAAGAGGAACGACGTTATCGCCGCGTTCTCATTATTGATGACGTGATAACCACAGGAAGCTCTGTTCATGCGCTCAG
TCAAGCCCTTAAACAATTAGGCTGCACATCCATTCATACGGCGTGCCTAGCGGCAACACTAAAGAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

83.981

98.565

0.828
  comF Acinetobacter baumannii D1279779

83.495

98.565

0.823