Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   SIY75_RS05460 Genome accession   NZ_CP139339
Coordinates   1122071..1122808 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain YZ22MPE6     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1117071..1127808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIY75_RS05430 yfiL 1117229..1117594 (-) 366 WP_024190950.1 DUF2799 domain-containing protein -
  SIY75_RS05435 aroF 1117804..1118874 (+) 1071 WP_089529868.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  SIY75_RS05440 tyrA 1118885..1120006 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  SIY75_RS05445 pheA 1120049..1121209 (-) 1161 WP_000200099.1 bifunctional chorismate mutase/prephenate dehydratase -
  SIY75_RS05450 pheL 1121308..1121355 (-) 48 WP_010723158.1 phe operon leader peptide -
  SIY75_RS05455 raiA 1121459..1121800 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  SIY75_RS05460 comL 1122071..1122808 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  SIY75_RS05465 rluD 1122943..1123923 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  SIY75_RS05470 yfiH 1123920..1124651 (+) 732 WP_001752929.1 purine nucleoside phosphorylase YfiH -
  SIY75_RS05475 clpC 1124781..1127354 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=830155 SIY75_RS05460 WP_000197686.1 1122071..1122808(-) (comL) [Escherichia coli strain YZ22MPE6]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=830155 SIY75_RS05460 WP_000197686.1 1122071..1122808(-) (comL) [Escherichia coli strain YZ22MPE6]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376