Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   R8623_RS00260 Genome accession   NZ_AP026928
Coordinates   43248..44018 (+) Length   256 a.a.
NCBI ID   WP_000616164.1    Uniprot ID   Q97TA7
Organism   Streptococcus pneumoniae strain PZ900700406     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 38248..49018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8623_RS00245 (PC0401_00450) - 40248..40685 (+) 438 WP_000076483.1 CoA-binding protein -
  R8623_RS00250 (PC0401_00460) - 40923..41933 (-) 1011 WP_000009141.1 YeiH family protein -
  R8623_RS00255 (PC0401_00480) - 42082..43251 (+) 1170 WP_000366376.1 pyridoxal phosphate-dependent aminotransferase -
  R8623_RS00260 (PC0401_00490) recO 43248..44018 (+) 771 WP_000616164.1 DNA repair protein RecO Machinery gene
  R8623_RS00265 (PC0401_00500) plsX 44015..45007 (+) 993 WP_000717464.1 phosphate acyltransferase PlsX -
  R8623_RS00270 (PC0401_00510) - 45013..45246 (+) 234 WP_000136447.1 acyl carrier protein -
  R8623_RS00275 (PC0401_00520) - 45283..45582 (+) 300 Protein_47 transposase family protein -
  R8623_RS00280 blpU 45785..46015 (+) 231 Protein_48 bacteriocin-like peptide BlpU -
  R8623_RS00285 - 46018..46143 (+) 126 WP_001840490.1 PncF family bacteriocin immunity protein -
  R8623_RS00290 - 46552..46746 (+) 195 WP_000756776.1 hypothetical protein -
  R8623_RS00295 (PC0401_00530) comR 46767..47660 (+) 894 WP_000343888.1 XRE family transcriptional regulator Regulator
  R8623_RS00300 (PC0401_00540) - 48203..48488 (+) 286 Protein_52 uberolysin/carnocyclin family circular bacteriocin -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29787.35 Da        Isoelectric Point: 5.8959

>NTDB_id=83000 R8623_RS00260 WP_000616164.1 43248..44018(+) (recO) [Streptococcus pneumoniae strain PZ900700406]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDKRRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=83000 R8623_RS00260 WP_000616164.1 43248..44018(+) (recO) [Streptococcus pneumoniae strain PZ900700406]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGAGCATTATCATGAGGATAAGAGACGTTGTCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAATTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q97TA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

99.219

100

0.992

Multiple sequence alignment