Detailed information
Bioinformatically predicted
Overview
| Name | clpX | Type | Regulator |
| Locus tag | QLH56_RS10095 | Genome accession | NZ_CP125107 |
| Coordinates | 2083552..2084781 (+) | Length | 409 a.a. |
| NCBI ID | WP_003099812.1 | Uniprot ID | - |
| Organism | Streptococcus iniae strain DFSM220524 | ||
| Function | require for competence development (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2055148..2104146 | 2083552..2084781 | within | 0 |
Gene organization within MGE regions
Location: 2055148..2104146
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QLH56_RS09970 (QLH56_09970) | - | 2055148..2055762 (+) | 615 | WP_016356029.1 | glycoside hydrolase family 73 protein | - |
| QLH56_RS09975 (QLH56_09975) | - | 2055887..2056652 (+) | 766 | Protein_1904 | glycoside hydrolase family 73 protein | - |
| QLH56_RS09980 (QLH56_09980) | tnpA | 2056791..2057264 (-) | 474 | WP_003099875.1 | IS200/IS605 family transposase | - |
| QLH56_RS09985 (QLH56_09985) | - | 2057461..2057982 (+) | 522 | WP_003099873.1 | hypothetical protein | - |
| QLH56_RS09990 (QLH56_09990) | - | 2058055..2058435 (+) | 381 | WP_003099871.1 | DUF1149 family protein | - |
| QLH56_RS09995 (QLH56_09995) | - | 2058435..2059286 (+) | 852 | WP_016356025.1 | DegV family protein | - |
| QLH56_RS10000 (QLH56_10000) | dapB | 2059303..2060070 (+) | 768 | WP_003099866.1 | 4-hydroxy-tetrahydrodipicolinate reductase | - |
| QLH56_RS10005 (QLH56_10005) | - | 2060067..2061275 (+) | 1209 | WP_003099863.1 | CCA tRNA nucleotidyltransferase | - |
| QLH56_RS10010 (QLH56_10010) | - | 2061272..2063158 (+) | 1887 | WP_003099861.1 | ABC-F family ATP-binding cassette domain-containing protein | - |
| QLH56_RS10015 (QLH56_10015) | - | 2063160..2063639 (+) | 480 | WP_003099856.1 | GNAT family N-acetyltransferase | - |
| QLH56_RS10020 (QLH56_10020) | - | 2063741..2065483 (+) | 1743 | WP_003099854.1 | ABC transporter ATP-binding protein | - |
| QLH56_RS10025 (QLH56_10025) | - | 2065483..2067249 (+) | 1767 | WP_003099853.1 | ABC transporter ATP-binding protein | - |
| QLH56_RS10030 (QLH56_10030) | gdhA | 2067383..2068732 (+) | 1350 | WP_003099852.1 | NADP-specific glutamate dehydrogenase | - |
| QLH56_RS10035 (QLH56_10035) | - | 2068812..2069222 (+) | 411 | WP_003099851.1 | peptide deformylase | - |
| QLH56_RS10040 (QLH56_10040) | - | 2069258..2071289 (-) | 2032 | Protein_1917 | 5'-nucleotidase C-terminal domain-containing protein | - |
| QLH56_RS10045 (QLH56_10045) | - | 2071865..2073586 (+) | 1722 | WP_003099849.1 | ABC transporter ATP-binding protein | - |
| QLH56_RS10050 (QLH56_10050) | - | 2073588..2075330 (+) | 1743 | WP_003099847.1 | ABC transporter ATP-binding protein | - |
| QLH56_RS10055 (QLH56_10055) | mvk | 2075461..2076345 (+) | 885 | WP_003099844.1 | mevalonate kinase | - |
| QLH56_RS10060 (QLH56_10060) | mvaD | 2076321..2077265 (+) | 945 | WP_003099837.1 | diphosphomevalonate decarboxylase | - |
| QLH56_RS10065 (QLH56_10065) | - | 2077258..2078277 (+) | 1020 | WP_003099834.1 | phosphomevalonate kinase | - |
| QLH56_RS10070 (QLH56_10070) | fni | 2078258..2079253 (+) | 996 | WP_003099830.1 | type 2 isopentenyl-diphosphate Delta-isomerase | - |
| QLH56_RS10075 (QLH56_10075) | - | 2079277..2080554 (-) | 1278 | WP_003099827.1 | hydroxymethylglutaryl-CoA reductase, degradative | - |
| QLH56_RS10080 (QLH56_10080) | - | 2080544..2081716 (-) | 1173 | WP_003099823.1 | hydroxymethylglutaryl-CoA synthase | - |
| QLH56_RS10085 (QLH56_10085) | - | 2081912..2082751 (+) | 840 | WP_017794807.1 | thymidylate synthase | - |
| QLH56_RS10090 (QLH56_10090) | - | 2082830..2083327 (+) | 498 | WP_003099817.1 | dihydrofolate reductase | - |
| QLH56_RS10095 (QLH56_10095) | clpX | 2083552..2084781 (+) | 1230 | WP_003099812.1 | ATP-dependent Clp protease ATP-binding subunit ClpX | Regulator |
| QLH56_RS10100 (QLH56_10100) | yihA | 2084791..2085390 (+) | 600 | WP_003099810.1 | ribosome biogenesis GTP-binding protein YihA/YsxC | - |
| QLH56_RS10105 (QLH56_10105) | - | 2085498..2086211 (+) | 714 | WP_003099809.1 | hypothetical protein | - |
| QLH56_RS10110 (QLH56_10110) | - | 2086283..2087625 (+) | 1343 | Protein_1931 | IS3 family transposase | - |
| QLH56_RS10115 (QLH56_10115) | - | 2087771..2088724 (+) | 954 | WP_003098612.1 | IS30 family transposase | - |
| QLH56_RS10120 (QLH56_10120) | rplJ | 2088988..2089488 (+) | 501 | WP_003099802.1 | 50S ribosomal protein L10 | - |
| QLH56_RS10125 (QLH56_10125) | rplL | 2089552..2089917 (+) | 366 | WP_003099800.1 | 50S ribosomal protein L7/L12 | - |
| QLH56_RS10130 (QLH56_10130) | tnpA | 2090140..2090580 (+) | 441 | WP_003099798.1 | IS200/IS605 family transposase | - |
| QLH56_RS10135 (QLH56_10135) | - | 2090648..2091753 (+) | 1106 | WP_089180059.1 | IS3 family transposase | - |
| QLH56_RS10140 (QLH56_10140) | - | 2092098..2093273 (-) | 1176 | WP_003099056.1 | IS256 family transposase | - |
| QLH56_RS10145 (QLH56_10145) | - | 2093533..2094453 (-) | 921 | WP_003099793.1 | polysaccharide deacetylase family protein | - |
| QLH56_RS10150 (QLH56_10150) | - | 2094638..2095924 (+) | 1287 | WP_016356020.1 | homoserine dehydrogenase | - |
| QLH56_RS10155 (QLH56_10155) | thrB | 2095926..2096786 (+) | 861 | WP_003099786.1 | homoserine kinase | - |
| QLH56_RS10160 (QLH56_10160) | - | 2096870..2098129 (+) | 1260 | WP_003099784.1 | folylpolyglutamate synthase/dihydrofolate synthase family protein | - |
| QLH56_RS10165 (QLH56_10165) | folE | 2098158..2098721 (+) | 564 | WP_003099782.1 | GTP cyclohydrolase I FolE | - |
| QLH56_RS10170 (QLH56_10170) | folP | 2098731..2099531 (+) | 801 | WP_003099781.1 | dihydropteroate synthase | - |
| QLH56_RS10175 (QLH56_10175) | folB | 2099538..2099897 (+) | 360 | WP_003099779.1 | dihydroneopterin aldolase | - |
| QLH56_RS10180 (QLH56_10180) | folK | 2099894..2100385 (+) | 492 | WP_003099778.1 | 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase | - |
| QLH56_RS10185 (QLH56_10185) | - | 2100637..2101809 (-) | 1173 | WP_282896340.1 | IS30 family transposase | - |
| QLH56_RS10190 (QLH56_10190) | murB | 2102064..2102957 (+) | 894 | WP_003099774.1 | UDP-N-acetylmuramate dehydrogenase | - |
| QLH56_RS10195 (QLH56_10195) | - | 2102992..2104146 (+) | 1155 | WP_003099772.1 | ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 409 a.a. Molecular weight: 45151.78 Da Isoelectric Point: 4.4847
>NTDB_id=829991 QLH56_RS10095 WP_003099812.1 2083552..2084781(+) (clpX) [Streptococcus iniae strain DFSM220524]
MAVNRTNDIKVHCSFCGKDQDEVKKIIAGNNVFICDECVALSQEIIKEELAEEVLADLTEVPKPKELLDILNQYVVGQDH
AKKALAVAVYNHYKRVSFTESRDEDEVELQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADYNVERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTEASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEEIVKQRLGEKIIGFGQNSRKIDEDASYMQEIIAEDIQKFGLIPEFIGRLPVVAALEQLTVADLIQI
LTEPRNALVKQYQALLSYDGVELEFEKAALEAIAAKAIERKTGARGLRSIIEETMLDIMFEIPSQEDVIKVRITKDSVDG
LKKPILETA
MAVNRTNDIKVHCSFCGKDQDEVKKIIAGNNVFICDECVALSQEIIKEELAEEVLADLTEVPKPKELLDILNQYVVGQDH
AKKALAVAVYNHYKRVSFTESRDEDEVELQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADYNVERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTEASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEEIVKQRLGEKIIGFGQNSRKIDEDASYMQEIIAEDIQKFGLIPEFIGRLPVVAALEQLTVADLIQI
LTEPRNALVKQYQALLSYDGVELEFEKAALEAIAAKAIERKTGARGLRSIIEETMLDIMFEIPSQEDVIKVRITKDSVDG
LKKPILETA
Nucleotide
Download Length: 1230 bp
>NTDB_id=829991 QLH56_RS10095 WP_003099812.1 2083552..2084781(+) (clpX) [Streptococcus iniae strain DFSM220524]
ATGGCAGTTAATCGTACAAACGATATTAAGGTCCATTGTTCATTTTGTGGCAAGGACCAAGATGAAGTTAAAAAAATTAT
TGCAGGGAACAATGTTTTCATCTGTGATGAATGTGTTGCATTATCTCAAGAAATTATAAAAGAAGAATTAGCAGAGGAAG
TATTAGCTGATTTAACGGAAGTTCCAAAACCAAAAGAACTTTTAGATATTTTAAATCAATATGTTGTTGGTCAAGACCAT
GCTAAAAAGGCTTTAGCAGTAGCAGTTTATAACCATTATAAGCGTGTTTCGTTTACAGAAAGTCGCGATGAAGATGAAGT
GGAATTGCAAAAGTCAAATATTCTCATGATTGGCCCAACTGGTTCAGGAAAAACCTTCTTGGCACAAACTTTGGCAAAAA
GTTTAAATGTACCATTTGCCATTGCGGATGCTACTTCATTAACTGAAGCTGGCTATGTCGGCGAAGATGTTGAGAATATT
CTGCTAAAATTAATTCAAGCAGCTGATTATAATGTAGAACGTGCAGAACGTGGCATTATTTATGTTGATGAAATTGATAA
AATTGCTAAAAAAGGGGAAAATGTTTCCATTACACGCGATGTCTCTGGTGAAGGTGTTCAACAAGCCCTGCTAAAAATTA
TTGAAGGCACAGAAGCAAGTGTTCCACCTCAAGGTGGACGTAAACACCCTAATCAAGAGATGATTCAAATTGATACGAAA
AATATTTTGTTCATCGTTGGTGGCGCTTTTGATGGCATTGAAGAAATTGTTAAACAGCGTCTTGGAGAAAAAATTATTGG
TTTTGGCCAAAATAGCCGTAAAATTGATGAAGATGCTTCATATATGCAAGAAATTATCGCAGAAGACATTCAAAAATTTG
GCCTTATTCCAGAATTTATTGGACGCTTACCTGTTGTTGCAGCCTTAGAACAGTTAACAGTTGCTGACCTGATTCAAATT
TTAACAGAACCAAGAAATGCTCTTGTTAAACAATACCAAGCTCTTTTATCTTATGATGGTGTTGAACTTGAATTTGAAAA
GGCTGCTTTGGAAGCTATTGCTGCAAAAGCTATAGAACGTAAAACTGGTGCGCGTGGCCTTCGTTCAATCATTGAAGAAA
CCATGCTTGACATTATGTTTGAAATCCCTAGTCAAGAAGATGTTATTAAGGTTCGCATTACTAAGGACTCTGTGGATGGG
CTTAAAAAACCTATTTTGGAAACGGCATAA
ATGGCAGTTAATCGTACAAACGATATTAAGGTCCATTGTTCATTTTGTGGCAAGGACCAAGATGAAGTTAAAAAAATTAT
TGCAGGGAACAATGTTTTCATCTGTGATGAATGTGTTGCATTATCTCAAGAAATTATAAAAGAAGAATTAGCAGAGGAAG
TATTAGCTGATTTAACGGAAGTTCCAAAACCAAAAGAACTTTTAGATATTTTAAATCAATATGTTGTTGGTCAAGACCAT
GCTAAAAAGGCTTTAGCAGTAGCAGTTTATAACCATTATAAGCGTGTTTCGTTTACAGAAAGTCGCGATGAAGATGAAGT
GGAATTGCAAAAGTCAAATATTCTCATGATTGGCCCAACTGGTTCAGGAAAAACCTTCTTGGCACAAACTTTGGCAAAAA
GTTTAAATGTACCATTTGCCATTGCGGATGCTACTTCATTAACTGAAGCTGGCTATGTCGGCGAAGATGTTGAGAATATT
CTGCTAAAATTAATTCAAGCAGCTGATTATAATGTAGAACGTGCAGAACGTGGCATTATTTATGTTGATGAAATTGATAA
AATTGCTAAAAAAGGGGAAAATGTTTCCATTACACGCGATGTCTCTGGTGAAGGTGTTCAACAAGCCCTGCTAAAAATTA
TTGAAGGCACAGAAGCAAGTGTTCCACCTCAAGGTGGACGTAAACACCCTAATCAAGAGATGATTCAAATTGATACGAAA
AATATTTTGTTCATCGTTGGTGGCGCTTTTGATGGCATTGAAGAAATTGTTAAACAGCGTCTTGGAGAAAAAATTATTGG
TTTTGGCCAAAATAGCCGTAAAATTGATGAAGATGCTTCATATATGCAAGAAATTATCGCAGAAGACATTCAAAAATTTG
GCCTTATTCCAGAATTTATTGGACGCTTACCTGTTGTTGCAGCCTTAGAACAGTTAACAGTTGCTGACCTGATTCAAATT
TTAACAGAACCAAGAAATGCTCTTGTTAAACAATACCAAGCTCTTTTATCTTATGATGGTGTTGAACTTGAATTTGAAAA
GGCTGCTTTGGAAGCTATTGCTGCAAAAGCTATAGAACGTAAAACTGGTGCGCGTGGCCTTCGTTCAATCATTGAAGAAA
CCATGCTTGACATTATGTTTGAAATCCCTAGTCAAGAAGATGTTATTAAGGTTCGCATTACTAAGGACTCTGTGGATGGG
CTTAAAAAACCTATTTTGGAAACGGCATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpX | Streptococcus mutans UA159 |
87.775 |
100 |
0.878 |
| clpX | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
57.895 |
97.555 |
0.565 |