Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   QLH56_RS02900 Genome accession   NZ_CP125107
Coordinates   619070..619996 (-) Length   308 a.a.
NCBI ID   WP_003100863.1    Uniprot ID   -
Organism   Streptococcus iniae strain DFSM220524     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 614070..624996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLH56_RS02885 (QLH56_02885) - 615448..616613 (+) 1166 Protein_560 IS30-like element ISSag9 family transposase -
  QLH56_RS02890 (QLH56_02890) amiF 617078..618001 (-) 924 WP_003100865.1 ATP-binding cassette domain-containing protein Regulator
  QLH56_RS02895 (QLH56_02895) amiE 617994..619064 (-) 1071 WP_031239151.1 ABC transporter ATP-binding protein Regulator
  QLH56_RS02900 (QLH56_02900) amiD 619070..619996 (-) 927 WP_003100863.1 oligopeptide ABC transporter permease OppC Regulator
  QLH56_RS02905 (QLH56_02905) amiC 619996..621495 (-) 1500 WP_003100862.1 ABC transporter permease Regulator
  QLH56_RS02910 (QLH56_02910) amiA3 621560..623539 (-) 1980 WP_003100861.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34540.45 Da        Isoelectric Point: 7.1552

>NTDB_id=829946 QLH56_RS02900 WP_003100863.1 619070..619996(-) (amiD) [Streptococcus iniae strain DFSM220524]
MATIDKSKFEFVELDSYASEVIDAPAYSYWKSVFRQFFARKSTIVMLLILITIILMSFIYPMFANYDFGDVSNINDFTKR
YISPNGEYWFGTDKNGQSLFDGVWYGARNSILISVIATMINMILGVIIGGLWGVSKAVDKVMIEVYNVISNLPQMLIIIV
LTYSIGAGFWNLIFAFCITGWIGIAYAVRVQVLRYRDLEYNLASQTLGTPTHKIVTKNLLPQLVSVIVSMVSLLLPAYIS
SEAFLSFFGLGLPLSEPSLGRLISNYSSNLTTNAYLFWIPLTTLILVSLPLYIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=829946 QLH56_RS02900 WP_003100863.1 619070..619996(-) (amiD) [Streptococcus iniae strain DFSM220524]
ATGGCGACAATAGACAAAAGTAAGTTCGAATTTGTTGAACTGGATTCTTATGCATCAGAAGTTATTGATGCCCCTGCTTA
CTCCTACTGGAAATCTGTTTTTAGACAATTTTTTGCGCGGAAATCTACTATAGTAATGTTGCTTATTTTGATTACTATTA
TTTTAATGAGCTTTATTTACCCAATGTTTGCCAACTATGATTTTGGTGATGTTAGCAATATCAATGATTTTACCAAGCGC
TACATTTCTCCAAATGGGGAATATTGGTTTGGTACAGATAAAAACGGGCAGTCGCTTTTTGATGGGGTTTGGTATGGTGC
TAGAAACTCAATCTTAATTTCTGTCATTGCAACAATGATTAACATGATTTTGGGTGTAATCATTGGAGGACTTTGGGGTG
TTTCTAAAGCTGTTGATAAAGTAATGATTGAAGTTTACAATGTCATTTCCAATCTGCCACAAATGCTGATTATCATTGTT
TTGACTTACTCCATTGGTGCAGGTTTCTGGAACTTGATTTTTGCTTTTTGTATTACAGGATGGATTGGTATTGCTTACGC
GGTTCGTGTCCAAGTGTTACGTTACCGTGATTTGGAATATAATTTAGCTAGTCAAACACTGGGAACGCCAACACATAAAA
TTGTAACAAAAAACCTTTTACCACAATTGGTTTCAGTTATTGTGTCAATGGTTTCCTTGTTACTTCCAGCCTATATTTCT
TCAGAAGCGTTTCTATCCTTCTTTGGATTAGGCTTACCGCTATCAGAGCCAAGTTTAGGTCGTTTAATTTCAAACTATTC
CTCTAATTTAACAACAAATGCCTATCTTTTCTGGATTCCATTAACCACTCTTATCTTAGTATCTCTTCCACTCTATATTG
TGGGCCAAAATTTGGCAGATGCTAGTGACCCAAGAACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

72.727

100

0.727
  amiD Streptococcus thermophilus LMG 18311

72.403

100

0.724
  amiD Streptococcus thermophilus LMD-9

72.403

100

0.724