Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   QMA14_RS09910 Genome accession   NZ_CP125087
Coordinates   2046873..2047598 (-) Length   241 a.a.
NCBI ID   WP_284173890.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain EL1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2041873..2052598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMA14_RS09890 (QMA14_09890) nrdR 2041986..2042435 (-) 450 WP_005695670.1 transcriptional regulator NrdR -
  QMA14_RS09895 (QMA14_09895) recC 2042513..2045872 (-) 3360 WP_284173888.1 exodeoxyribonuclease V subunit gamma -
  QMA14_RS09900 (QMA14_09900) comQ 2045910..2046176 (-) 267 WP_284174494.1 DUF5374 domain-containing protein Machinery gene
  QMA14_RS09905 (QMA14_09905) comP 2046190..2046876 (-) 687 WP_284173889.1 DUF2572 family protein Machinery gene
  QMA14_RS09910 (QMA14_09910) comO 2046873..2047598 (-) 726 WP_284173890.1 type II secretion system protein J Machinery gene
  QMA14_RS09915 (QMA14_09915) comN 2047586..2048104 (-) 519 WP_284173891.1 prepilin-type cleavage/methylation domain-containing protein Machinery gene
  QMA14_RS09920 (QMA14_09920) suhB 2048305..2049105 (+) 801 WP_049355386.1 inositol-1-monophosphatase -
  QMA14_RS09925 (QMA14_09925) bioB 2049151..2050167 (-) 1017 WP_284173892.1 biotin synthase BioB -
  QMA14_RS09930 (QMA14_09930) thiQ 2050241..2050870 (-) 630 WP_049375627.1 thiamine ABC transporter ATP-binding protein -
  QMA14_RS09935 (QMA14_09935) thiP 2050863..2052467 (-) 1605 WP_284173893.1 thiamine/thiamine pyrophosphate ABC transporter permease ThiP -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26980.13 Da        Isoelectric Point: 8.2167

>NTDB_id=829904 QMA14_RS09910 WP_284173890.1 2046873..2047598(-) (comO) [Haemophilus parainfluenzae strain EL1]
MYKMKPLKGETLVSLLISLGLSALLLLLVAQFYAQTQQQNQRLMLQLKLQAELQRTIQLIGKDLRRVGFRGANQKLIEDN
LALFELDEKGTAITIAQADNTPSNSCVLFFYDLNSNGCIGEKYTKNTCVNGVKNVAKNIEKELFGYKLNGKMIETKQTYK
NAVNADCRSAECQRALAQSTCNAGGGWTDLLDEKEFEISQLRFDWLKAGKGIEIKLAGNLATHKHIQYETSLVVPLLNQE
E

Nucleotide


Download         Length: 726 bp        

>NTDB_id=829904 QMA14_RS09910 WP_284173890.1 2046873..2047598(-) (comO) [Haemophilus parainfluenzae strain EL1]
ATGTACAAGATGAAACCATTAAAAGGTGAAACATTGGTGAGTTTGTTGATTTCACTTGGCTTATCCGCTTTATTATTGTT
ATTGGTTGCACAATTTTATGCCCAAACTCAACAGCAAAATCAGCGTTTAATGTTACAACTCAAACTACAAGCAGAATTAC
AACGCACAATTCAACTCATCGGGAAAGATTTGCGTCGCGTAGGCTTTCGGGGCGCAAACCAAAAACTCATCGAGGATAAT
CTGGCTTTATTTGAATTGGATGAAAAGGGCACTGCAATAACCATTGCTCAAGCTGATAATACCCCGTCAAATAGTTGTGT
TTTGTTTTTTTATGATTTGAATAGCAATGGTTGTATTGGTGAAAAATACACAAAAAATACCTGCGTAAATGGCGTTAAAA
ATGTGGCGAAAAATATCGAAAAAGAGCTATTTGGTTACAAACTTAACGGGAAAATGATCGAAACCAAACAAACCTACAAA
AATGCAGTAAATGCAGATTGTCGCTCGGCAGAGTGTCAGCGTGCTTTAGCGCAATCTACTTGTAACGCAGGTGGTGGATG
GACTGATTTATTGGATGAAAAAGAGTTTGAGATTTCTCAATTACGTTTTGATTGGTTAAAGGCAGGGAAAGGGATTGAAA
TCAAACTCGCGGGAAATCTTGCAACACATAAGCATATTCAATATGAAACTTCGCTTGTGGTGCCTTTATTAAATCAAGAA
GAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

61.966

97.095

0.602