Detailed information NTG0829862

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QFB74_RS17160
• Genome accession: NZ_CP125086
• Coordinates: 3303907..3304707 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae subsp. pneumoniae strain HVKP2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3298907..3309707

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QFB74_RS17125	gspH	3299063..3299578 (+)	516	WP_004183045.1	type II secretion system minor pseudopilin GspH	-
QFB74_RS17130	gspI	3299575..3299940 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
QFB74_RS17135	gspJ	3299937..3300533 (+)	597	WP_012737414.1	type II secretion system minor pseudopilin GspJ	-
QFB74_RS17140	gspK	3300530..3301516 (+)	987	WP_077250502.1	type II secretion system minor pseudopilin GspK	-
QFB74_RS17145	gspL	3301503..3302696 (+)	1194	WP_012737412.1	type II secretion system protein GspL	-
QFB74_RS17150	-	3302689..3303174 (+)	486	WP_012737411.1	type II secretion system protein M	-
QFB74_RS17155	-	3303164..3303910 (+)	747	WP_012737410.1	type II secretion system protein N	-
QFB74_RS17160	pilD	3303907..3304707 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
QFB74_RS17165	hrpB	3304755..3307184 (-)	2430	WP_012737409.1	ATP-dependent helicase HrpB	-
QFB74_RS17170	thpR	3307257..3307793 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
QFB74_RS17175	sfsA	3307793..3308509 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
QFB74_RS17180	dksA	3308672..3309127 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=829862 QFB74_RS17160 WP_004145898.1 3303907..3304707(+) (pilD) [Klebsiella pneumoniae subsp. pneumoniae strain HVKP2]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=829862 QFB74_RS17160 WP_004145898.1 3303907..3304707(+) (pilD) [Klebsiella pneumoniae subsp. pneumoniae strain HVKP2]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425