Detailed information NTG0829840

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QFB57_RS15660
• Genome accession: NZ_CP125083
• Coordinates: 3042655..3043455 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae subsp. pneumoniae strain HVKP1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3037655..3048455

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QFB57_RS15625	gspH	3037811..3038326 (+)	516	WP_032446426.1	type II secretion system minor pseudopilin GspH	-
QFB57_RS15630	gspI	3038323..3038688 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
QFB57_RS15635	gspJ	3038685..3039281 (+)	597	WP_032446428.1	type II secretion system minor pseudopilin GspJ	-
QFB57_RS15640	gspK	3039278..3040264 (+)	987	WP_004178610.1	type II secretion system minor pseudopilin GspK	-
QFB57_RS15645	gspL	3040251..3041444 (+)	1194	WP_032446429.1	type II secretion system protein GspL	-
QFB57_RS15650	-	3041437..3041922 (+)	486	WP_004183037.1	type II secretion system protein M	-
QFB57_RS15655	-	3041912..3042658 (+)	747	WP_032446430.1	type II secretion system protein N	-
QFB57_RS15660	pilD	3042655..3043455 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
QFB57_RS15665	hrpB	3043503..3045932 (-)	2430	WP_282822339.1	ATP-dependent helicase HrpB	-
QFB57_RS15670	thpR	3046005..3046541 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
QFB57_RS15675	sfsA	3046541..3047257 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
QFB57_RS15680	dksA	3047420..3047875 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=829840 QFB57_RS15660 WP_004145898.1 3042655..3043455(+) (pilD) [Klebsiella pneumoniae subsp. pneumoniae strain HVKP1]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=829840 QFB57_RS15660 WP_004145898.1 3042655..3043455(+) (pilD) [Klebsiella pneumoniae subsp. pneumoniae strain HVKP1]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAACTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425