Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   SIS06_RS08525 Genome accession   NZ_CP139188
Coordinates   1590672..1591694 (+) Length   340 a.a.
NCBI ID   WP_128737829.1    Uniprot ID   -
Organism   Bacillus subtilis strain H17-16     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1585672..1596694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIS06_RS08490 (SIS06_08490) ylbE 1585972..1586211 (+) 240 WP_003232231.1 YlbE-like family protein -
  SIS06_RS08495 (SIS06_08495) ylbF 1586327..1586776 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  SIS06_RS08500 (SIS06_08500) ylbG 1586831..1587103 (+) 273 WP_015715839.1 YlbG family protein -
  SIS06_RS08505 (SIS06_08505) rsmD 1587426..1587980 (+) 555 WP_015483196.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  SIS06_RS08510 (SIS06_08510) coaD 1587985..1588470 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  SIS06_RS08515 (SIS06_08515) spoVV 1588481..1589707 (-) 1227 WP_283934334.1 dipicolinic acid transporter SpoVV -
  SIS06_RS08520 (SIS06_08520) ylbK 1589888..1590670 (+) 783 WP_064671351.1 patatin family protein -
  SIS06_RS08525 (SIS06_08525) sepM 1590672..1591694 (+) 1023 WP_128737829.1 protease DdcP Regulator
  SIS06_RS08530 (SIS06_08530) - 1591885..1592334 (-) 450 WP_128737830.1 hypothetical protein -
  SIS06_RS08535 (SIS06_08535) - 1592407..1593639 (-) 1233 WP_128737831.1 nucleotidyltransferase -
  SIS06_RS08540 (SIS06_08540) - 1593636..1593821 (-) 186 WP_003232215.1 hypothetical protein -
  SIS06_RS08545 (SIS06_08545) ylbN 1593849..1594367 (+) 519 WP_014479718.1 YceD family protein -
  SIS06_RS08550 (SIS06_08550) rpmF 1594389..1594568 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  SIS06_RS08555 (SIS06_08555) gerR 1594714..1595295 (+) 582 WP_015383592.1 sporulation specific transcriptional regulator GerR -
  SIS06_RS08560 (SIS06_08560) ylbP 1595352..1595834 (-) 483 WP_014476736.1 N-acetyltransferase -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 37550.13 Da        Isoelectric Point: 6.5347

>NTDB_id=829808 SIS06_RS08525 WP_128737829.1 1590672..1591694(+) (sepM) [Bacillus subtilis strain H17-16]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKS

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=829808 SIS06_RS08525 WP_128737829.1 1590672..1591694(+) (sepM) [Bacillus subtilis strain H17-16]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CTGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATTGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
TGGGAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCTGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGTTAA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

Peptidase family M50 (Peptidase_M50)

(59-220)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.403