Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   SIS06_RS08495 Genome accession   NZ_CP139188
Coordinates   1586327..1586776 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain H17-16     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1581327..1591776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIS06_RS08455 (SIS06_08455) ctaE 1581343..1581966 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  SIS06_RS08460 (SIS06_08460) ctaF 1581969..1582301 (+) 333 WP_106073894.1 cytochrome c oxidase subunit IVB -
  SIS06_RS08465 (SIS06_08465) ctaG 1582329..1583222 (+) 894 WP_033883825.1 cytochrome c oxidase assembly factor CtaG -
  SIS06_RS08470 (SIS06_08470) ylbA 1583254..1583616 (-) 363 WP_003232238.1 YugN family protein -
  SIS06_RS08475 (SIS06_08475) ylbB 1583756..1584202 (+) 447 WP_003221362.1 CBS domain-containing protein -
  SIS06_RS08480 (SIS06_08480) ylbC 1584286..1585326 (+) 1041 WP_041335865.1 CAP domain-containing protein -
  SIS06_RS08485 (SIS06_08485) ylbD 1585558..1585956 (+) 399 WP_003232233.1 YlbD family protein -
  SIS06_RS08490 (SIS06_08490) ylbE 1585972..1586211 (+) 240 WP_003232231.1 YlbE-like family protein -
  SIS06_RS08495 (SIS06_08495) ylbF 1586327..1586776 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  SIS06_RS08500 (SIS06_08500) ylbG 1586831..1587103 (+) 273 WP_015715839.1 YlbG family protein -
  SIS06_RS08505 (SIS06_08505) rsmD 1587426..1587980 (+) 555 WP_015483196.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  SIS06_RS08510 (SIS06_08510) coaD 1587985..1588470 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  SIS06_RS08515 (SIS06_08515) spoVV 1588481..1589707 (-) 1227 WP_283934334.1 dipicolinic acid transporter SpoVV -
  SIS06_RS08520 (SIS06_08520) ylbK 1589888..1590670 (+) 783 WP_064671351.1 patatin family protein -
  SIS06_RS08525 (SIS06_08525) sepM 1590672..1591694 (+) 1023 WP_128737829.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=829807 SIS06_RS08495 WP_003221370.1 1586327..1586776(+) (ylbF) [Bacillus subtilis strain H17-16]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=829807 SIS06_RS08495 WP_003221370.1 1586327..1586776(+) (ylbF) [Bacillus subtilis strain H17-16]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTCGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1