Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   SJH97_RS24125 Genome accession   NZ_CP139175
Coordinates   5179113..5181314 (+) Length   733 a.a.
NCBI ID   WP_320586823.1    Uniprot ID   -
Organism   Streptomyces sp. CL7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5174113..5186314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJH97_RS24100 (SJH97_24100) - 5174553..5174786 (-) 234 WP_004983019.1 Lrp/AsnC family transcriptional regulator -
  SJH97_RS24105 (SJH97_24105) - 5174993..5175958 (+) 966 WP_093763935.1 thiamine-phosphate kinase -
  SJH97_RS24110 (SJH97_24110) thiD 5175955..5176770 (+) 816 WP_320586821.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  SJH97_RS24115 (SJH97_24115) rpmB 5176899..5177084 (-) 186 WP_003993230.1 50S ribosomal protein L28 -
  SJH97_RS24120 (SJH97_24120) - 5177351..5179039 (+) 1689 WP_320586822.1 DAK2 domain-containing protein -
  SJH97_RS24125 (SJH97_24125) recG 5179113..5181314 (+) 2202 WP_320586823.1 ATP-dependent DNA helicase RecG Machinery gene
  SJH97_RS24130 (SJH97_24130) rsmD 5181377..5181964 (+) 588 WP_093763939.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  SJH97_RS24135 (SJH97_24135) coaD 5181991..5182470 (+) 480 WP_006130469.1 pantetheine-phosphate adenylyltransferase -
  SJH97_RS24140 (SJH97_24140) - 5182583..5183677 (+) 1095 WP_320586824.1 ATP synthase F0 subunit B -
  SJH97_RS24145 (SJH97_24145) - 5183810..5184454 (+) 645 WP_093763941.1 YceD family protein -
  SJH97_RS24150 (SJH97_24150) rpmF 5184457..5184630 (+) 174 WP_003951102.1 50S ribosomal protein L32 -
  SJH97_RS24155 (SJH97_24155) rnc 5184650..5185468 (+) 819 WP_093763942.1 ribonuclease III -

Sequence

Protein


Download         Length: 733 a.a.        Molecular weight: 79631.24 Da        Isoelectric Point: 6.2627

>NTDB_id=829564 SJH97_RS24125 WP_320586823.1 5179113..5181314(+) (recG) [Streptomyces sp. CL7]
MDPVPALDEPLKKVLGPATAKVMAEHLGLHTIGDLLHHYPRRYEERGQLTHLADLPMDEHVTVVAQVADARLHTFASSRA
PRGKGQRLEVTITDGSGRLQLVFFGAGVHKPHKELLPGTRAMFAGKVSVFNRRLQLAHPAYELLRGDAEETVETWAGALI
PIYPATAKLESWKIGKALQTVLPSAQEAADPLPEPLREGRGLVTLPEALLKIHRPHTKADIEEARARLKWDEAFVLQVAL
ARRRHADAQLPAVPRRPRPDGILAAFDDRLPFTLTEGQRKVSEEIFADLATDHPMHRLLQGEVGSGKTMVALRAMLAVVD
AGGQAAMLAPTEVLAQQHHRSVTEMMGDLAQGGMLGGADDATKVVLLTGSMGTAARRQALLDLATGEAGIVIGTHALIED
KVQFHDLGLVVVDEQHRFGVEQRDALRGKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPAAD
KPHFLARAWERVREEVEKGHQAYVVCPRIGDEEDGAKAKKKSPEDEAEKRPPLAVLDTAEQLARGPLAGLRVDVLHGRMP
PDDKDAVMRRFAAGEVDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVTEMPEAGPARQ
RLNAVASTLDGFELSRIDLEQRREGDVLGQAQSGTRSSLRMLAVIDDEEVIAEAREEAARIVAADPDLERLPALRTALDA
LLDEEREQYLEKG

Nucleotide


Download         Length: 2202 bp        

>NTDB_id=829564 SJH97_RS24125 WP_320586823.1 5179113..5181314(+) (recG) [Streptomyces sp. CL7]
ATGGATCCCGTGCCCGCACTGGACGAACCACTGAAGAAGGTGCTCGGCCCCGCCACCGCGAAGGTGATGGCCGAGCACCT
CGGCCTGCACACCATCGGCGACCTGCTGCACCACTACCCGCGCCGGTACGAGGAGCGCGGCCAGCTCACCCACCTCGCCG
ACCTGCCGATGGACGAGCACGTGACCGTGGTCGCGCAGGTCGCCGACGCCCGGCTGCACACCTTCGCCTCCAGCCGCGCC
CCGCGCGGCAAGGGCCAGCGCCTGGAGGTGACGATCACCGACGGCAGCGGCCGGCTGCAGCTGGTCTTCTTCGGCGCCGG
TGTCCACAAGCCGCACAAGGAACTCCTGCCGGGCACCCGCGCGATGTTCGCCGGCAAGGTCTCCGTCTTCAACCGCCGCC
TCCAACTCGCCCATCCCGCCTACGAGTTGCTGCGCGGGGACGCCGAGGAGACCGTCGAGACCTGGGCGGGCGCGCTCATC
CCGATCTACCCGGCCACCGCCAAGCTGGAGTCCTGGAAGATCGGCAAGGCGCTGCAGACCGTGCTGCCCAGCGCCCAGGA
GGCCGCCGACCCGCTGCCCGAGCCGCTGCGCGAGGGCCGCGGCCTGGTCACGCTGCCCGAGGCGCTGCTGAAGATCCACC
GCCCGCACACCAAGGCGGACATCGAGGAGGCCCGCGCCCGCCTCAAGTGGGACGAGGCGTTCGTCCTCCAGGTCGCCCTC
GCCCGCCGCCGGCACGCCGATGCGCAGCTCCCGGCCGTGCCCCGCCGCCCGCGGCCCGACGGCATCCTCGCCGCCTTCGA
CGACCGTCTCCCCTTCACCCTCACCGAGGGCCAGCGCAAGGTCTCCGAGGAGATCTTCGCCGACCTCGCCACCGACCACC
CCATGCACCGCCTGCTCCAGGGCGAGGTCGGCTCCGGCAAGACCATGGTCGCCCTGCGCGCCATGCTCGCCGTCGTCGAC
GCGGGCGGTCAGGCGGCGATGCTCGCGCCCACCGAGGTCCTCGCCCAGCAGCACCACCGTTCGGTCACCGAGATGATGGG
GGATCTGGCCCAGGGAGGCATGCTCGGGGGCGCGGACGACGCCACCAAGGTGGTGCTGCTCACCGGCTCCATGGGCACCG
CCGCCCGCCGCCAGGCCCTGCTCGACCTGGCCACCGGCGAGGCCGGCATCGTCATCGGCACGCACGCGCTGATCGAGGAC
AAGGTGCAGTTCCACGACCTCGGCCTGGTCGTCGTGGACGAGCAGCACCGCTTCGGCGTCGAGCAGCGCGACGCCCTGCG
CGGCAAGGGAAAGCAGCCGCCGCACCTGCTCGTCATGACGGCCACGCCCATTCCGCGCACGGTCGCCATGACCGTCTTCG
GCGACCTGGAGACCTCTGTCCTGGACCAGCTCCCGGCCGGCCGCTCGCCCATCGCCAGCCATGTCGTCCCGGCCGCCGAC
AAACCGCACTTCCTCGCCCGCGCCTGGGAGCGCGTGCGCGAGGAGGTGGAGAAGGGCCACCAGGCGTACGTGGTCTGCCC
GCGCATCGGCGACGAGGAGGACGGGGCCAAGGCGAAGAAGAAGTCCCCCGAGGACGAGGCCGAGAAGCGGCCCCCGCTCG
CCGTGCTGGACACCGCCGAGCAGCTCGCGCGGGGCCCGCTGGCCGGACTGCGCGTGGACGTCCTGCACGGCAGGATGCCG
CCCGACGACAAGGACGCCGTGATGCGCCGGTTCGCCGCCGGAGAGGTGGACGTCCTGGTGGCCACCACCGTCATCGAGGT
CGGCGTCAACGTCCCGAACGCCACCGCGATGGTGATCATGGACGCCGACCGCTTCGGCGTCTCCCAGCTGCACCAGCTGC
GCGGCCGCGTCGGCCGCGGCTCGGCGCCCGGACTGTGCCTGCTGGTCACCGAGATGCCCGAGGCCGGTCCCGCCCGCCAG
CGGCTCAACGCCGTCGCGTCCACCCTCGACGGCTTCGAGCTCTCCCGCATCGACCTCGAACAGCGCCGTGAGGGCGACGT
GCTGGGCCAGGCCCAGTCCGGCACCCGGTCCAGTCTGCGCATGCTCGCCGTCATCGACGACGAGGAGGTCATCGCCGAGG
CGCGCGAGGAGGCCGCCAGGATCGTCGCCGCCGACCCGGACCTGGAGCGTCTGCCCGCCCTGCGCACCGCGCTGGACGCC
CTGCTGGACGAGGAGCGTGAGCAGTACCTGGAGAAGGGCTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(296-448)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(648-709)

Helicase conserved C-terminal domain (Helicase_C)

(496-620)

OB-fold nucleic acid binding domain (tRNA_anti-codon)

(61-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

38.506

94.952

0.366
  recG Bacillus subtilis subsp. subtilis str. 168

37.931

94.952

0.36