Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   H7679_RS05460 Genome accession   NZ_AP023392
Coordinates   1092628..1093854 (-) Length   408 a.a.
NCBI ID   WP_024396051.1    Uniprot ID   A0A540UDI3
Organism   Streptococcus suis strain DAT300     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1087628..1098854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7679_RS05435 (DAT300_10330) - 1087967..1088149 (+) 183 WP_002934978.1 4-oxalocrotonate tautomerase -
  H7679_RS05440 (DAT300_10340) lepA 1088199..1090031 (-) 1833 WP_044679726.1 translation elongation factor 4 -
  H7679_RS05445 - 1090257..1091513 (+) 1257 WP_184496043.1 ISL3 family transposase -
  H7679_RS05450 (DAT300_10350) ndk 1091549..1091962 (-) 414 WP_024396050.1 nucleoside-diphosphate kinase -
  H7679_RS05455 (DAT300_10360) yihA 1091985..1092572 (-) 588 WP_014638915.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  H7679_RS05460 (DAT300_10370) clpX 1092628..1093854 (-) 1227 WP_024396051.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  H7679_RS05465 (DAT300_10390) - 1094052..1094564 (-) 513 WP_023370398.1 dihydrofolate reductase -
  H7679_RS05470 (DAT300_10400) - 1094900..1095739 (-) 840 WP_024396052.1 thymidylate synthase -
  H7679_RS05475 - 1095792..1096094 (-) 303 WP_024396053.1 hypothetical protein -
  H7679_RS05480 (DAT300_10410) - 1096106..1096384 (-) 279 WP_024381822.1 hypothetical protein -
  H7679_RS05485 (DAT300_10420) - 1096510..1097469 (-) 960 WP_024396054.1 ROK family glucokinase -
  H7679_RS05490 - 1097590..1098846 (-) 1257 WP_063725149.1 ISL3 family transposase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45317.85 Da        Isoelectric Point: 4.6742

>NTDB_id=82956 H7679_RS05460 WP_024396051.1 1092628..1093854(-) (clpX) [Streptococcus suis strain DAT300]
MAVKHTHELIYCSFCGKNQEEVKKIIAGNNVFICNECVELAQEIIREELAEEVLTDLADTPKPQELLNILNNYVIGQDRA
KRALAVAVYNHYKRINFQDSRDENDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENIL
LKLLQAADFNIDRAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIHVDTKN
ILFIVGGAFDGIEEIVKQRLGEKIIGFGHNNRAIDEKESYMQHIIADDIQKFGIIPELIGRLPVFAALDQLTTEDLVRIL
TEPKNALVKQYQTLLSYDDVELDFDEDALLAIAEKAIERKTGARGLRSIIEETMLDVMFEVPGQNNVKRVRVTKAAVDGK
EKPLLETA

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=82956 H7679_RS05460 WP_024396051.1 1092628..1093854(-) (clpX) [Streptococcus suis strain DAT300]
ATGGCTGTTAAGCATACACATGAGCTAATCTATTGCTCATTTTGCGGAAAAAATCAAGAAGAAGTTAAAAAAATTATCGC
AGGGAACAATGTCTTCATTTGTAATGAGTGCGTGGAACTAGCACAGGAAATCATTCGTGAGGAACTGGCAGAAGAAGTTT
TGACAGACTTGGCCGATACGCCAAAGCCACAAGAATTACTCAATATCCTGAACAACTACGTCATCGGACAGGATCGTGCA
AAACGTGCTTTAGCAGTAGCCGTTTACAACCACTACAAACGTATCAATTTCCAAGATAGCCGTGATGAGAACGATGTTGA
TTTGCAAAAATCAAATATCCTCATGATTGGCCCGACTGGCTCAGGAAAAACCTTCCTAGCTCAGACCTTGGCTAAAAGTT
TGAATGTCCCGTTTGCTATTGCCGATGCGACCGCTCTTACTGAGGCGGGTTATGTTGGTGAAGACGTAGAAAATATCCTC
CTCAAACTTTTGCAGGCTGCAGACTTTAACATCGACCGCGCAGAAAGAGGAATTATCTATGTGGATGAAATTGATAAGAT
TGCCAAAAAAGGTGAAAATGTGTCCATTACCCGCGATGTATCTGGTGAAGGTGTCCAGCAAGCTCTCCTAAAAATTATCG
AGGGAACTGTGGCCAGCGTACCACCACAAGGTGGACGCAAACATCCAAACCAAGAAATGATTCACGTGGACACCAAAAAT
ATCCTGTTTATCGTTGGCGGTGCATTTGATGGTATCGAAGAAATCGTCAAACAGCGTCTCGGTGAAAAAATCATCGGTTT
TGGTCATAATAATCGTGCTATTGATGAAAAAGAATCATACATGCAACATATCATTGCAGACGATATTCAAAAATTCGGTA
TCATTCCAGAGTTGATTGGTCGCTTGCCTGTATTCGCAGCTTTGGACCAATTGACAACAGAGGATTTGGTACGCATTTTG
ACGGAACCGAAGAATGCTCTTGTAAAACAATACCAGACACTCTTGTCTTATGATGACGTGGAGCTTGACTTTGATGAGGA
CGCCTTGTTAGCAATTGCAGAAAAAGCAATTGAACGTAAGACTGGTGCTCGTGGACTTCGTTCCATCATTGAAGAAACGA
TGTTGGATGTCATGTTTGAGGTGCCAGGCCAAAATAACGTTAAACGCGTTCGTGTAACAAAAGCAGCAGTAGACGGTAAG
GAAAAGCCTTTACTAGAAACTGCATAA

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-47)

AAA domain (Cdc48 subfamily) (AAA_2)

(109-304)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A540UDI3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

83.13

100

0.833
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.209

98.529

0.574

Multiple sequence alignment