Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   SJH97_RS17850 Genome accession   NZ_CP139175
Coordinates   3854777..3855442 (+) Length   221 a.a.
NCBI ID   WP_093764477.1    Uniprot ID   A0ACC6UPA9
Organism   Streptomyces sp. CL7     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3849777..3860442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJH97_RS17830 (SJH97_17830) - 3850121..3851314 (+) 1194 WP_320585974.1 acyltransferase family protein -
  SJH97_RS17835 (SJH97_17835) - 3851307..3852650 (+) 1344 WP_320585975.1 sensor histidine kinase -
  SJH97_RS17840 (SJH97_17840) - 3852647..3853309 (+) 663 WP_320585976.1 response regulator transcription factor -
  SJH97_RS17845 (SJH97_17845) - 3853425..3854780 (+) 1356 WP_320585977.1 sensor histidine kinase -
  SJH97_RS17850 (SJH97_17850) vraR 3854777..3855442 (+) 666 WP_093764477.1 response regulator Regulator
  SJH97_RS17855 (SJH97_17855) - 3855482..3855916 (+) 435 WP_320585978.1 VOC family protein -
  SJH97_RS17860 (SJH97_17860) - 3855970..3857190 (+) 1221 WP_320585979.1 cytochrome P450 -
  SJH97_RS17865 (SJH97_17865) - 3857222..3858883 (-) 1662 WP_320585980.1 ABC transporter permease -
  SJH97_RS17870 (SJH97_17870) - 3858880..3859845 (-) 966 WP_320585981.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23887.66 Da        Isoelectric Point: 4.6488

>NTDB_id=829543 SJH97_RS17850 WP_093764477.1 3854777..3855442(+) (vraR) [Streptomyces sp. CL7]
MTIRVLIADDQMMVREGFSVLLNAMPDMEVVGEAVNGRQAVEKVRELAPDVVLMDIRMPELNGIEATREIVAADGAAKVL
VLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVAAGEALLAPSVTRRLITEFSKLSDAPRVLPSVQAAYGDLTE
RETEVLVLIAQGLSNAEIAERLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLVTPG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=829543 SJH97_RS17850 WP_093764477.1 3854777..3855442(+) (vraR) [Streptomyces sp. CL7]
ATGACCATTCGCGTGCTGATCGCGGACGACCAGATGATGGTGCGCGAGGGTTTCTCGGTGCTGCTCAACGCGATGCCGGA
CATGGAGGTCGTCGGCGAGGCCGTCAACGGCCGGCAGGCGGTCGAGAAGGTCCGCGAACTCGCCCCCGACGTCGTGCTGA
TGGACATCCGCATGCCGGAGCTGAACGGCATCGAGGCGACCCGGGAGATCGTCGCGGCGGACGGCGCGGCGAAGGTGCTG
GTGCTCACCACCTTCGACCTGGACGAGTACGTCTACCAGGCGCTGCGCGCGGGCGCCTCGGGCTTCCTCCTCAAGGACGC
CTCCGCGCGTCAGCTCGCCGACGGTGTGCGGGTCGTCGCGGCCGGCGAGGCGCTGCTCGCCCCGTCGGTCACCCGGCGGC
TGATCACCGAGTTCTCCAAGCTGTCCGACGCGCCCCGGGTGCTGCCGTCCGTGCAGGCCGCGTACGGGGACCTCACTGAG
CGGGAGACGGAGGTGCTGGTGCTGATCGCCCAGGGCCTGTCGAACGCGGAGATCGCCGAGCGGCTGGTGGTGGCCGAGTC
GACCATCAAGACCCACGTCAGCCGCATCCTGGTGAAGCTGGGCCTGCGCGACCGCACCCAGGCGGCGGTCTTCGCGTACG
AGGCGCGTCTGGTCACGCCGGGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(158-212)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

43.578

98.643

0.43
  degU Bacillus subtilis subsp. subtilis str. 168

42.857

98.19

0.421