Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   H7679_RS03280 Genome accession   NZ_AP023392
Coordinates   636680..637483 (+) Length   267 a.a.
NCBI ID   WP_002935843.1    Uniprot ID   -
Organism   Streptococcus suis strain DAT300     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 631680..642483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7679_RS03255 (DAT300_05940) - 632109..632807 (-) 699 WP_004298848.1 amino acid ABC transporter permease -
  H7679_RS03260 (DAT300_05950) - 632822..633661 (-) 840 WP_105115141.1 transporter substrate-binding domain-containing protein -
  H7679_RS03265 (DAT300_05960) - 633672..634433 (-) 762 WP_002935839.1 amino acid ABC transporter ATP-binding protein -
  H7679_RS03270 (DAT300_05970) micA 634627..635331 (+) 705 WP_004298854.1 response regulator YycF Regulator
  H7679_RS03275 (DAT300_05980) micB 635324..636673 (+) 1350 WP_002935841.1 cell wall metabolism sensor histidine kinase VicK Regulator
  H7679_RS03280 (DAT300_05990) vicX 636680..637483 (+) 804 WP_002935843.1 MBL fold metallo-hydrolase Regulator
  H7679_RS03285 (DAT300_06000) vga(F) 637843..639228 (+) 1386 WP_014637680.1 ABC-F type ribosomal protection protein Vga(F) -
  H7679_RS03290 (DAT300_06010) pbp2b 639320..641389 (+) 2070 WP_014637681.1 penicillin-binding protein PBP2B -
  H7679_RS03295 (DAT300_06020) recR 641398..641994 (+) 597 WP_024399909.1 recombination mediator RecR -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29659.75 Da        Isoelectric Point: 5.7755

>NTDB_id=82946 H7679_RS03280 WP_002935843.1 636680..637483(+) (vicX) [Streptococcus suis strain DAT300]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=82946 H7679_RS03280 WP_002935843.1 636680..637483(+) (vicX) [Streptococcus suis strain DAT300]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTACCTAGAAACAGATAAAAA
GAAAATCTTAGTGGATGCTGGCTTATCAGGGAAAAAGATTACCAGTCTTTTAGCGGAAATTGATCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGGATGGAT
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTCGA
ATTGGGTGCTATGAAGACTTTTGGCGACCTAGATATTGAGTCATTTGGAGTTAGCCATGATGCTGCATGTCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATGTTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCGAACCATGATATTGAAATTTTGCGCTCGGGTTCTTACTCTTGGAACCTCAA
ACAACGGATTCTATCCGATAAGGGACATCTTTGTAACGAAGATGGAGCTGATGCCATGATTCGCTCGTTGGGAAATCGGA
CCAAAAAGATTTACCTAGGGCATTTGTCAAAGGAAAACAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAGTTG
GCGCAGGCTGATTTAGGAGTTGGAGTGGATTTCCAGGTCTATGATACCTCGCCAGATACAGCGACTCCCTTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.154

100

0.772

Multiple sequence alignment