Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   R9806_RS30470 Genome accession   NZ_CP139044
Coordinates   7003784..7004446 (+) Length   220 a.a.
NCBI ID   WP_223773859.1    Uniprot ID   -
Organism   Streptomyces sp. KN37     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6998784..7009446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R9806_RS30460 (R9806_30460) - 7001477..7002169 (-) 693 WP_223773861.1 transglycosylase SLT domain-containing protein -
  R9806_RS30465 (R9806_30465) - 7002646..7003791 (+) 1146 WP_223773860.1 GAF domain-containing sensor histidine kinase -
  R9806_RS30470 (R9806_30470) vraR 7003784..7004446 (+) 663 WP_223773859.1 response regulator Regulator
  R9806_RS30475 (R9806_30475) - 7004606..7004851 (+) 246 WP_223773858.1 chaplin -
  R9806_RS30480 (R9806_30480) - 7004891..7005130 (+) 240 WP_223773857.1 chaplin -
  R9806_RS30485 (R9806_30485) - 7005238..7006020 (-) 783 WP_223773856.1 hypothetical protein -
  R9806_RS30490 (R9806_30490) - 7006142..7006939 (+) 798 WP_223773855.1 ABC transporter ATP-binding protein -
  R9806_RS30495 (R9806_30495) - 7006999..7007436 (+) 438 WP_223773854.1 NfeD family protein -
  R9806_RS30500 (R9806_30500) - 7007536..7008471 (+) 936 WP_127912969.1 SPFH domain-containing protein -
  R9806_RS30505 (R9806_30505) - 7008512..7009018 (-) 507 WP_223773853.1 HNH endonuclease -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23683.11 Da        Isoelectric Point: 6.3910

>NTDB_id=829246 R9806_RS30470 WP_223773859.1 7003784..7004446(+) (vraR) [Streptomyces sp. KN37]
MADAVRRARNGIRVLLVDDHQVVRRGLRTFLEIQDDIEVVGEASDGAEGVAQAEELKPDVVLMDVKMPGMDGVEALRKLR
ELANPARVLIVTSFTEQRTVVPALRAGAAGYVYKDVDPDALAGAIRSVHAGHVLLQPEVAGALLSQEEAHGGHGRGGSLT
EREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGMAG

Nucleotide


Download         Length: 663 bp        

>NTDB_id=829246 R9806_RS30470 WP_223773859.1 7003784..7004446(+) (vraR) [Streptomyces sp. KN37]
GTGGCTGACGCGGTGCGCAGAGCGAGGAACGGGATCCGGGTGCTGCTGGTCGACGACCATCAGGTGGTGCGCCGCGGTCT
GCGGACGTTCCTGGAGATCCAGGACGACATCGAGGTCGTCGGCGAGGCCTCCGACGGCGCCGAAGGGGTGGCGCAGGCCG
AGGAGTTGAAGCCGGACGTCGTCCTGATGGACGTCAAGATGCCCGGCATGGACGGCGTAGAGGCGCTGCGCAAGCTCCGC
GAACTGGCCAACCCCGCGCGCGTGCTCATCGTCACCAGCTTCACCGAGCAGCGCACGGTGGTCCCGGCCCTGCGCGCGGG
CGCCGCGGGGTATGTCTACAAGGACGTCGACCCGGACGCCCTCGCCGGCGCCATCCGCTCGGTGCACGCGGGACACGTCC
TGCTCCAGCCCGAGGTGGCGGGCGCGCTGCTCTCCCAGGAGGAGGCGCACGGCGGCCACGGCAGGGGCGGTTCACTCACC
GAGCGCGAGCGGGAGGTCCTCGGCCTGATCGCCGACGGCCGCTCGAACCGCGAGATCGCCCGCGCCCTGGTGCTCTCCGA
GAAGACCGTCAAGACGCACGTCTCGAACATCCTGATGAAACTGGACCTGGCCGACCGCACCCAGGCCGCGCTCTGGGCCG
TACGCCACGGCATGGCCGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(14-125)

Bacterial regulatory proteins, luxR family (GerE)

(158-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.894

94.091

0.432
  degU Bacillus subtilis subsp. subtilis str. 168

39.819

100

0.4