Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | QLQ53_RS04615 | Genome accession | NZ_CP124911 |
| Coordinates | 918394..918921 (+) | Length | 175 a.a. |
| NCBI ID | WP_282854022.1 | Uniprot ID | - |
| Organism | Enterococcus faecalis strain EfsC61 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 908481..946139 | 918394..918921 | within | 0 |
Gene organization within MGE regions
Location: 908481..946139
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QLQ53_RS04530 (QLQ53_04530) | - | 908863..909999 (-) | 1137 | WP_002401948.1 | site-specific integrase | - |
| QLQ53_RS04535 (QLQ53_04535) | - | 910124..910708 (-) | 585 | WP_002401949.1 | DUF4352 domain-containing protein | - |
| QLQ53_RS04540 (QLQ53_04540) | - | 910790..911047 (-) | 258 | Protein_876 | toxin | - |
| QLQ53_RS04545 (QLQ53_04545) | - | 911075..911812 (-) | 738 | WP_002401950.1 | DUF4950 domain-containing protein | - |
| QLQ53_RS04550 (QLQ53_04550) | - | 911834..912472 (-) | 639 | Protein_878 | ImmA/IrrE family metallo-endopeptidase | - |
| QLQ53_RS04555 (QLQ53_04555) | - | 912487..912831 (-) | 345 | WP_010731661.1 | helix-turn-helix transcriptional regulator | - |
| QLQ53_RS04560 (QLQ53_04560) | - | 913141..913317 (+) | 177 | WP_002364354.1 | helix-turn-helix transcriptional regulator | - |
| QLQ53_RS04565 (QLQ53_04565) | - | 913331..913669 (+) | 339 | WP_002401953.1 | DUF771 domain-containing protein | - |
| QLQ53_RS04570 (QLQ53_04570) | - | 913672..914385 (+) | 714 | WP_104681384.1 | Rha family transcriptional regulator | - |
| QLQ53_RS04575 (QLQ53_04575) | - | 914396..914581 (+) | 186 | WP_002401956.1 | hypothetical protein | - |
| QLQ53_RS04580 (QLQ53_04580) | - | 914593..914766 (+) | 174 | WP_002395693.1 | hypothetical protein | - |
| QLQ53_RS04585 (QLQ53_04585) | - | 914966..915088 (+) | 123 | WP_002364322.1 | hypothetical protein | - |
| QLQ53_RS04590 (QLQ53_04590) | - | 915072..915551 (+) | 480 | WP_002381628.1 | siphovirus Gp157 family protein | - |
| QLQ53_RS04595 (QLQ53_04595) | - | 915563..916579 (+) | 1017 | WP_002381629.1 | AAA family ATPase | - |
| QLQ53_RS04600 (QLQ53_04600) | - | 916584..917225 (+) | 642 | WP_002401957.1 | putative HNHc nuclease | - |
| QLQ53_RS04605 (QLQ53_04605) | - | 917245..918096 (+) | 852 | WP_282854056.1 | DNA replication protein | - |
| QLQ53_RS04610 (QLQ53_04610) | - | 918096..918404 (+) | 309 | WP_010783686.1 | MazG-like family protein | - |
| QLQ53_RS04615 (QLQ53_04615) | ssb | 918394..918921 (+) | 528 | WP_282854022.1 | single-stranded DNA-binding protein | Machinery gene |
| QLQ53_RS04620 (QLQ53_04620) | - | 918933..919262 (+) | 330 | WP_010821535.1 | hypothetical protein | - |
| QLQ53_RS04625 (QLQ53_04625) | - | 919282..919488 (+) | 207 | WP_002395813.1 | hypothetical protein | - |
| QLQ53_RS04630 (QLQ53_04630) | - | 919541..920305 (+) | 765 | WP_010785682.1 | site-specific DNA-methyltransferase | - |
| QLQ53_RS04635 (QLQ53_04635) | - | 920349..920843 (+) | 495 | WP_095725297.1 | YopX family protein | - |
| QLQ53_RS04640 (QLQ53_04640) | - | 920840..921001 (+) | 162 | WP_002402357.1 | hypothetical protein | - |
| QLQ53_RS04645 (QLQ53_04645) | - | 920998..921330 (+) | 333 | WP_002402358.1 | hypothetical protein | - |
| QLQ53_RS04650 (QLQ53_04650) | - | 921327..921560 (+) | 234 | WP_002402359.1 | hypothetical protein | - |
| QLQ53_RS04655 (QLQ53_04655) | - | 921557..921751 (+) | 195 | WP_002402360.1 | hypothetical protein | - |
| QLQ53_RS04660 (QLQ53_04660) | - | 921763..922020 (+) | 258 | WP_174092930.1 | hypothetical protein | - |
| QLQ53_RS15045 | - | 922017..922599 (+) | 583 | Protein_901 | ASCH/PUA domain-containing protein | - |
| QLQ53_RS04675 (QLQ53_04675) | - | 922613..923098 (+) | 486 | WP_002389003.1 | hypothetical protein | - |
| QLQ53_RS04680 (QLQ53_04680) | - | 923099..923281 (+) | 183 | WP_002389222.1 | hypothetical protein | - |
| QLQ53_RS04685 (QLQ53_04685) | - | 923464..923667 (+) | 204 | WP_282854026.1 | hypothetical protein | - |
| QLQ53_RS04690 (QLQ53_04690) | - | 923703..923852 (-) | 150 | WP_174092928.1 | hypothetical protein | - |
| QLQ53_RS04695 (QLQ53_04695) | - | 923940..924347 (+) | 408 | WP_002364505.1 | transcriptional regulator | - |
| QLQ53_RS04700 (QLQ53_04700) | - | 924664..925029 (+) | 366 | WP_033780470.1 | hypothetical protein | - |
| QLQ53_RS04705 (QLQ53_04705) | - | 925099..925560 (+) | 462 | WP_002414515.1 | terminase small subunit | - |
| QLQ53_RS04710 (QLQ53_04710) | - | 925550..926824 (+) | 1275 | WP_025188082.1 | PBSX family phage terminase large subunit | - |
| QLQ53_RS04715 (QLQ53_04715) | - | 926837..928312 (+) | 1476 | WP_025186476.1 | phage portal protein | - |
| QLQ53_RS04720 (QLQ53_04720) | - | 928287..929333 (+) | 1047 | WP_282854028.1 | phage head morphogenesis protein | - |
| QLQ53_RS04725 (QLQ53_04725) | - | 929336..929656 (+) | 321 | WP_104681295.1 | hypothetical protein | - |
| QLQ53_RS04730 (QLQ53_04730) | - | 929875..930504 (+) | 630 | WP_142959624.1 | DUF4355 domain-containing protein | - |
| QLQ53_RS04735 (QLQ53_04735) | - | 930518..931420 (+) | 903 | WP_016634610.1 | DUF5309 family protein | - |
| QLQ53_RS04740 (QLQ53_04740) | - | 931444..931680 (+) | 237 | WP_002402418.1 | hypothetical protein | - |
| QLQ53_RS04745 (QLQ53_04745) | - | 931689..932033 (+) | 345 | WP_002402417.1 | hypothetical protein | - |
| QLQ53_RS04750 (QLQ53_04750) | - | 932030..932407 (+) | 378 | WP_002402416.1 | hypothetical protein | - |
| QLQ53_RS04755 (QLQ53_04755) | - | 932400..932798 (+) | 399 | WP_002402415.1 | HK97 gp10 family phage protein | - |
| QLQ53_RS04760 (QLQ53_04760) | - | 932802..933176 (+) | 375 | WP_002402414.1 | DUF6838 family protein | - |
| QLQ53_RS04765 (QLQ53_04765) | - | 933177..934019 (+) | 843 | WP_104681298.1 | major tail protein | - |
| QLQ53_RS04770 (QLQ53_04770) | - | 934071..934424 (+) | 354 | WP_002364485.1 | hypothetical protein | - |
| QLQ53_RS04775 (QLQ53_04775) | - | 934674..937571 (+) | 2898 | WP_282854057.1 | tape measure protein | - |
| QLQ53_RS15050 | - | 937561..938294 (+) | 734 | Protein_923 | phage tail protein | - |
| QLQ53_RS04785 (QLQ53_04785) | - | 938276..940990 (+) | 2715 | WP_025192971.1 | phage tail spike protein | - |
| QLQ53_RS04790 (QLQ53_04790) | - | 941006..941908 (+) | 903 | WP_104681299.1 | phage baseplate upper protein | - |
| QLQ53_RS04795 (QLQ53_04795) | - | 941908..942222 (+) | 315 | WP_104681300.1 | hypothetical protein | - |
| QLQ53_RS04800 (QLQ53_04800) | - | 942215..942532 (+) | 318 | WP_025193310.1 | hypothetical protein | - |
| QLQ53_RS04805 (QLQ53_04805) | - | 942532..943749 (+) | 1218 | WP_104681301.1 | glycerophosphodiester phosphodiesterase | - |
| QLQ53_RS04810 (QLQ53_04810) | - | 943775..943981 (+) | 207 | WP_002395769.1 | BhlA/UviB family holin-like peptide | - |
| QLQ53_RS04815 (QLQ53_04815) | - | 944023..945126 (+) | 1104 | WP_104681302.1 | SH3 domain-containing protein | - |
| QLQ53_RS04820 (QLQ53_04820) | - | 945345..945518 (+) | 174 | WP_002409502.1 | hypothetical protein | - |
| QLQ53_RS04825 (QLQ53_04825) | - | 945528..946139 (+) | 612 | WP_002409501.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 19316.20 Da Isoelectric Point: 4.7305
>NTDB_id=829194 QLQ53_RS04615 WP_282854022.1 918394..918921(+) (ssb) [Enterococcus faecalis strain EfsC61]
MINNVVLIGRLTKDIDLRYTASGSAVGSFTLAVNRNFTNQNGEREADFINCVIWRKPAETMANYARKGTLLGVVGRIQTR
NYDNQQGQRVYVTEVVCESFQLLESKSTNENRNSVQSSQNSVTGVQNDFESNYAANQNKGLNQQNNSQKMSFGGDVDPFA
GAGNSIDISDDDLPF
MINNVVLIGRLTKDIDLRYTASGSAVGSFTLAVNRNFTNQNGEREADFINCVIWRKPAETMANYARKGTLLGVVGRIQTR
NYDNQQGQRVYVTEVVCESFQLLESKSTNENRNSVQSSQNSVTGVQNDFESNYAANQNKGLNQQNNSQKMSFGGDVDPFA
GAGNSIDISDDDLPF
Nucleotide
Download Length: 528 bp
>NTDB_id=829194 QLQ53_RS04615 WP_282854022.1 918394..918921(+) (ssb) [Enterococcus faecalis strain EfsC61]
ATGATAAATAATGTGGTATTAATCGGAAGGCTGACAAAAGATATAGATTTACGCTACACCGCAAGTGGTTCTGCAGTTGG
AAGCTTTACTCTTGCTGTGAACCGTAACTTTACAAACCAAAACGGCGAACGAGAAGCGGATTTTATCAACTGTGTAATTT
GGCGTAAGCCTGCTGAAACAATGGCTAATTATGCTCGTAAAGGAACATTATTAGGAGTTGTTGGAAGAATTCAAACTCGT
AATTATGACAACCAACAAGGCCAACGTGTCTATGTGACTGAAGTTGTTTGCGAAAGCTTCCAATTATTAGAGTCAAAAAG
CACCAACGAGAATAGAAATAGCGTTCAGAGTTCGCAGAATAGCGTTACAGGCGTTCAAAATGATTTCGAGAGTAATTATG
CCGCAAATCAAAACAAAGGCTTAAATCAGCAAAATAACAGCCAAAAAATGTCGTTTGGTGGAGATGTAGATCCGTTCGCA
GGTGCAGGTAATTCAATCGACATTAGCGATGATGATCTGCCTTTTTAG
ATGATAAATAATGTGGTATTAATCGGAAGGCTGACAAAAGATATAGATTTACGCTACACCGCAAGTGGTTCTGCAGTTGG
AAGCTTTACTCTTGCTGTGAACCGTAACTTTACAAACCAAAACGGCGAACGAGAAGCGGATTTTATCAACTGTGTAATTT
GGCGTAAGCCTGCTGAAACAATGGCTAATTATGCTCGTAAAGGAACATTATTAGGAGTTGTTGGAAGAATTCAAACTCGT
AATTATGACAACCAACAAGGCCAACGTGTCTATGTGACTGAAGTTGTTTGCGAAAGCTTCCAATTATTAGAGTCAAAAAG
CACCAACGAGAATAGAAATAGCGTTCAGAGTTCGCAGAATAGCGTTACAGGCGTTCAAAATGATTTCGAGAGTAATTATG
CCGCAAATCAAAACAAAGGCTTAAATCAGCAAAATAACAGCCAAAAAATGTCGTTTGGTGGAGATGTAGATCCGTTCGCA
GGTGCAGGTAATTCAATCGACATTAGCGATGATGATCTGCCTTTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.551 |
100 |
0.606 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.865 |
100 |
0.589 |