Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | QLQ59_RS03975 | Genome accession | NZ_CP124906 |
| Coordinates | 806775..807302 (+) | Length | 175 a.a. |
| NCBI ID | WP_104681348.1 | Uniprot ID | - |
| Organism | Enterococcus faecalis strain EfsC49 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 795525..833552 | 806775..807302 | within | 0 |
Gene organization within MGE regions
Location: 795525..833552
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QLQ59_RS03885 (QLQ59_03885) | - | 795525..796718 (+) | 1194 | WP_002355922.1 | GNAT family N-acetyltransferase | - |
| QLQ59_RS03895 (QLQ59_03895) | - | 797183..798319 (-) | 1137 | WP_002401948.1 | site-specific integrase | - |
| QLQ59_RS03900 (QLQ59_03900) | - | 798444..799028 (-) | 585 | WP_002401949.1 | DUF4352 domain-containing protein | - |
| QLQ59_RS03905 (QLQ59_03905) | - | 799110..799367 (-) | 258 | Protein_752 | toxin | - |
| QLQ59_RS03910 (QLQ59_03910) | - | 799395..800132 (-) | 738 | WP_002401950.1 | DUF4950 domain-containing protein | - |
| QLQ59_RS03915 (QLQ59_03915) | - | 800154..800792 (-) | 639 | WP_010783680.1 | ImmA/IrrE family metallo-endopeptidase | - |
| QLQ59_RS03920 (QLQ59_03920) | - | 800807..801151 (-) | 345 | WP_010731661.1 | helix-turn-helix transcriptional regulator | - |
| QLQ59_RS03925 (QLQ59_03925) | - | 801461..801637 (+) | 177 | WP_002364354.1 | helix-turn-helix transcriptional regulator | - |
| QLQ59_RS03930 (QLQ59_03930) | - | 801651..801989 (+) | 339 | WP_002401953.1 | DUF771 domain-containing protein | - |
| QLQ59_RS03935 (QLQ59_03935) | - | 801992..802705 (+) | 714 | WP_104670706.1 | Rha family transcriptional regulator | - |
| QLQ59_RS03940 (QLQ59_03940) | - | 802716..802901 (+) | 186 | WP_002364665.1 | hypothetical protein | - |
| QLQ59_RS03945 (QLQ59_03945) | - | 802913..803086 (+) | 174 | WP_002395693.1 | hypothetical protein | - |
| QLQ59_RS03950 (QLQ59_03950) | - | 803287..804030 (+) | 744 | WP_002401996.1 | ERF family protein | - |
| QLQ59_RS03955 (QLQ59_03955) | - | 804030..804968 (+) | 939 | WP_002401997.1 | DUF1351 domain-containing protein | - |
| QLQ59_RS03960 (QLQ59_03960) | - | 804965..805606 (+) | 642 | WP_002401998.1 | putative HNHc nuclease | - |
| QLQ59_RS03965 (QLQ59_03965) | - | 805626..806477 (+) | 852 | WP_033780568.1 | hypothetical protein | - |
| QLQ59_RS03970 (QLQ59_03970) | - | 806477..806785 (+) | 309 | WP_002381633.1 | MazG-like family protein | - |
| QLQ59_RS03975 (QLQ59_03975) | ssb | 806775..807302 (+) | 528 | WP_104681348.1 | single-stranded DNA-binding protein | Machinery gene |
| QLQ59_RS03980 (QLQ59_03980) | - | 807315..807644 (+) | 330 | WP_063855926.1 | hypothetical protein | - |
| QLQ59_RS03985 (QLQ59_03985) | - | 807721..807870 (+) | 150 | WP_240185670.1 | hypothetical protein | - |
| QLQ59_RS03990 (QLQ59_03990) | - | 807930..808316 (+) | 387 | WP_095715052.1 | YopX family protein | - |
| QLQ59_RS03995 (QLQ59_03995) | - | 808313..808651 (+) | 339 | WP_113817025.1 | hypothetical protein | - |
| QLQ59_RS04000 (QLQ59_04000) | - | 808651..809220 (+) | 570 | WP_105194754.1 | DUF1642 domain-containing protein | - |
| QLQ59_RS04005 (QLQ59_04005) | - | 809403..809570 (+) | 168 | WP_113817026.1 | hypothetical protein | - |
| QLQ59_RS04010 (QLQ59_04010) | - | 809993..810409 (+) | 417 | WP_002357362.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| QLQ59_RS04020 (QLQ59_04020) | - | 811264..812124 (+) | 861 | WP_002369895.1 | hypothetical protein | - |
| QLQ59_RS04025 (QLQ59_04025) | - | 812929..813153 (+) | 225 | WP_002404955.1 | hypothetical protein | - |
| QLQ59_RS04030 (QLQ59_04030) | terS | 813206..814000 (+) | 795 | WP_113817027.1 | phage terminase small subunit | - |
| QLQ59_RS04035 (QLQ59_04035) | - | 813972..815261 (+) | 1290 | WP_105194787.1 | PBSX family phage terminase large subunit | - |
| QLQ59_RS04040 (QLQ59_04040) | - | 815274..816749 (+) | 1476 | WP_105194786.1 | phage portal protein | - |
| QLQ59_RS04045 (QLQ59_04045) | - | 816724..817767 (+) | 1044 | WP_113817028.1 | phage head morphogenesis protein | - |
| QLQ59_RS04050 (QLQ59_04050) | - | 817773..818093 (+) | 321 | WP_010783706.1 | hypothetical protein | - |
| QLQ59_RS04055 (QLQ59_04055) | - | 818312..818938 (+) | 627 | WP_002372028.1 | DUF4355 domain-containing protein | - |
| QLQ59_RS04060 (QLQ59_04060) | - | 818952..819854 (+) | 903 | WP_002372024.1 | DUF5309 family protein | - |
| QLQ59_RS04065 (QLQ59_04065) | - | 819878..820114 (+) | 237 | WP_002372022.1 | hypothetical protein | - |
| QLQ59_RS04070 (QLQ59_04070) | - | 820123..820467 (+) | 345 | WP_002372020.1 | hypothetical protein | - |
| QLQ59_RS04075 (QLQ59_04075) | - | 820464..820847 (+) | 384 | WP_113817029.1 | hypothetical protein | - |
| QLQ59_RS04080 (QLQ59_04080) | - | 820834..821232 (+) | 399 | WP_002402415.1 | HK97 gp10 family phage protein | - |
| QLQ59_RS04085 (QLQ59_04085) | - | 821236..821610 (+) | 375 | WP_105194784.1 | DUF6838 family protein | - |
| QLQ59_RS04090 (QLQ59_04090) | - | 821611..822453 (+) | 843 | WP_105194783.1 | major tail protein | - |
| QLQ59_RS04095 (QLQ59_04095) | - | 822506..822859 (+) | 354 | WP_002364485.1 | hypothetical protein | - |
| QLQ59_RS04100 (QLQ59_04100) | - | 823108..826005 (+) | 2898 | WP_033780571.1 | tape measure protein | - |
| QLQ59_RS04105 (QLQ59_04105) | - | 825995..826729 (+) | 735 | WP_002402410.1 | tail protein | - |
| QLQ59_RS04110 (QLQ59_04110) | - | 826711..829425 (+) | 2715 | WP_162783240.1 | phage tail spike protein | - |
| QLQ59_RS04115 (QLQ59_04115) | - | 829441..830316 (+) | 876 | WP_113817031.1 | phage baseplate upper protein | - |
| QLQ59_RS04120 (QLQ59_04120) | - | 830309..830626 (+) | 318 | WP_002385668.1 | hypothetical protein | - |
| QLQ59_RS04125 (QLQ59_04125) | - | 830619..830936 (+) | 318 | WP_002385669.1 | hypothetical protein | - |
| QLQ59_RS04130 (QLQ59_04130) | - | 830936..831445 (+) | 510 | WP_002394069.1 | hypothetical protein | - |
| QLQ59_RS04135 (QLQ59_04135) | - | 831462..831836 (+) | 375 | WP_033780492.1 | hypothetical protein | - |
| QLQ59_RS04140 (QLQ59_04140) | - | 831836..831973 (+) | 138 | WP_002399193.1 | XkdX family protein | - |
| QLQ59_RS04145 (QLQ59_04145) | - | 832007..832240 (+) | 234 | WP_002383824.1 | hemolysin XhlA family protein | - |
| QLQ59_RS04150 (QLQ59_04150) | - | 832243..832449 (+) | 207 | WP_010784051.1 | phage holin | - |
| QLQ59_RS04155 (QLQ59_04155) | - | 832452..833552 (+) | 1101 | WP_113817032.1 | SH3 domain-containing protein | - |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 19311.19 Da Isoelectric Point: 4.6968
>NTDB_id=829119 QLQ59_RS03975 WP_104681348.1 806775..807302(+) (ssb) [Enterococcus faecalis strain EfsC49]
MINNVVLVGRLTKDLDLRYTASGSAVGSFTLAVNRNFTNQNGDREADFINCVIWRKPAETMANYARKGTLLGVVGRIQTR
NYDNQQGQRVYVTEVVCESFQLLEPKSANENRNSIQSSQNSVTGVQNNFESNYATNQNKGLNQQNNSQQMSFGGDVDPFA
GAGNSIDISDDDLPF
MINNVVLVGRLTKDLDLRYTASGSAVGSFTLAVNRNFTNQNGDREADFINCVIWRKPAETMANYARKGTLLGVVGRIQTR
NYDNQQGQRVYVTEVVCESFQLLEPKSANENRNSIQSSQNSVTGVQNNFESNYATNQNKGLNQQNNSQQMSFGGDVDPFA
GAGNSIDISDDDLPF
Nucleotide
Download Length: 528 bp
>NTDB_id=829119 QLQ59_RS03975 WP_104681348.1 806775..807302(+) (ssb) [Enterococcus faecalis strain EfsC49]
ATGATAAATAATGTGGTATTAGTCGGAAGATTGACAAAAGATCTTGATTTACGCTACACCGCAAGTGGTTCTGCAGTTGG
AAGCTTTACTCTTGCTGTGAACCGTAACTTTACAAACCAAAATGGTGACCGTGAAGCAGACTTTATCAACTGTGTGATTT
GGCGTAAGCCTGCTGAAACAATGGCTAATTATGCTCGCAAAGGAACATTATTAGGAGTTGTTGGAAGAATTCAAACTCGT
AATTATGACAACCAACAAGGCCAACGTGTCTATGTGACTGAAGTTGTTTGCGAGAGTTTCCAATTATTAGAGCCAAAAAG
CGCCAATGAGAATAGAAATAGCATTCAGAGTTCACAGAATAGCGTTACAGGCGTTCAAAATAATTTCGAGAGTAATTATG
CCACGAATCAAAACAAAGGCTTAAATCAGCAAAATAACAGCCAACAAATGTCGTTTGGTGGAGATGTAGATCCGTTCGCA
GGCGCAGGTAATTCAATCGACATTAGCGATGATGATCTGCCGTTCTAG
ATGATAAATAATGTGGTATTAGTCGGAAGATTGACAAAAGATCTTGATTTACGCTACACCGCAAGTGGTTCTGCAGTTGG
AAGCTTTACTCTTGCTGTGAACCGTAACTTTACAAACCAAAATGGTGACCGTGAAGCAGACTTTATCAACTGTGTGATTT
GGCGTAAGCCTGCTGAAACAATGGCTAATTATGCTCGCAAAGGAACATTATTAGGAGTTGTTGGAAGAATTCAAACTCGT
AATTATGACAACCAACAAGGCCAACGTGTCTATGTGACTGAAGTTGTTTGCGAGAGTTTCCAATTATTAGAGCCAAAAAG
CGCCAATGAGAATAGAAATAGCATTCAGAGTTCACAGAATAGCGTTACAGGCGTTCAAAATAATTTCGAGAGTAATTATG
CCACGAATCAAAACAAAGGCTTAAATCAGCAAAATAACAGCCAACAAATGTCGTTTGGTGGAGATGTAGATCCGTTCGCA
GGCGCAGGTAATTCAATCGACATTAGCGATGATGATCTGCCGTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.551 |
100 |
0.606 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
58.427 |
100 |
0.594 |