Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QLQ59_RS03975 Genome accession   NZ_CP124906
Coordinates   806775..807302 (+) Length   175 a.a.
NCBI ID   WP_104681348.1    Uniprot ID   -
Organism   Enterococcus faecalis strain EfsC49     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 801775..812302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ59_RS03935 (QLQ59_03935) - 801992..802705 (+) 714 WP_104670706.1 Rha family transcriptional regulator -
  QLQ59_RS03940 (QLQ59_03940) - 802716..802901 (+) 186 WP_002364665.1 hypothetical protein -
  QLQ59_RS03945 (QLQ59_03945) - 802913..803086 (+) 174 WP_002395693.1 hypothetical protein -
  QLQ59_RS03950 (QLQ59_03950) - 803287..804030 (+) 744 WP_002401996.1 ERF family protein -
  QLQ59_RS03955 (QLQ59_03955) - 804030..804968 (+) 939 WP_002401997.1 DUF1351 domain-containing protein -
  QLQ59_RS03960 (QLQ59_03960) - 804965..805606 (+) 642 WP_002401998.1 putative HNHc nuclease -
  QLQ59_RS03965 (QLQ59_03965) - 805626..806477 (+) 852 WP_033780568.1 hypothetical protein -
  QLQ59_RS03970 (QLQ59_03970) - 806477..806785 (+) 309 WP_002381633.1 MazG-like family protein -
  QLQ59_RS03975 (QLQ59_03975) ssb 806775..807302 (+) 528 WP_104681348.1 single-stranded DNA-binding protein Machinery gene
  QLQ59_RS03980 (QLQ59_03980) - 807315..807644 (+) 330 WP_063855926.1 hypothetical protein -
  QLQ59_RS03985 (QLQ59_03985) - 807721..807870 (+) 150 WP_240185670.1 hypothetical protein -
  QLQ59_RS03990 (QLQ59_03990) - 807930..808316 (+) 387 WP_095715052.1 YopX family protein -
  QLQ59_RS03995 (QLQ59_03995) - 808313..808651 (+) 339 WP_113817025.1 hypothetical protein -
  QLQ59_RS04000 (QLQ59_04000) - 808651..809220 (+) 570 WP_105194754.1 DUF1642 domain-containing protein -
  QLQ59_RS04005 (QLQ59_04005) - 809403..809570 (+) 168 WP_113817026.1 hypothetical protein -
  QLQ59_RS04010 (QLQ59_04010) - 809993..810409 (+) 417 WP_002357362.1 ArpU family phage packaging/lysis transcriptional regulator -
  QLQ59_RS04020 (QLQ59_04020) - 811264..812124 (+) 861 WP_002369895.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19311.19 Da        Isoelectric Point: 4.6968

>NTDB_id=829119 QLQ59_RS03975 WP_104681348.1 806775..807302(+) (ssb) [Enterococcus faecalis strain EfsC49]
MINNVVLVGRLTKDLDLRYTASGSAVGSFTLAVNRNFTNQNGDREADFINCVIWRKPAETMANYARKGTLLGVVGRIQTR
NYDNQQGQRVYVTEVVCESFQLLEPKSANENRNSIQSSQNSVTGVQNNFESNYATNQNKGLNQQNNSQQMSFGGDVDPFA
GAGNSIDISDDDLPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=829119 QLQ59_RS03975 WP_104681348.1 806775..807302(+) (ssb) [Enterococcus faecalis strain EfsC49]
ATGATAAATAATGTGGTATTAGTCGGAAGATTGACAAAAGATCTTGATTTACGCTACACCGCAAGTGGTTCTGCAGTTGG
AAGCTTTACTCTTGCTGTGAACCGTAACTTTACAAACCAAAATGGTGACCGTGAAGCAGACTTTATCAACTGTGTGATTT
GGCGTAAGCCTGCTGAAACAATGGCTAATTATGCTCGCAAAGGAACATTATTAGGAGTTGTTGGAAGAATTCAAACTCGT
AATTATGACAACCAACAAGGCCAACGTGTCTATGTGACTGAAGTTGTTTGCGAGAGTTTCCAATTATTAGAGCCAAAAAG
CGCCAATGAGAATAGAAATAGCATTCAGAGTTCACAGAATAGCGTTACAGGCGTTCAAAATAATTTCGAGAGTAATTATG
CCACGAATCAAAACAAAGGCTTAAATCAGCAAAATAACAGCCAACAAATGTCGTTTGGTGGAGATGTAGATCCGTTCGCA
GGCGCAGGTAATTCAATCGACATTAGCGATGATGATCTGCCGTTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.551

100

0.606
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.427

100

0.594