Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   SID94_RS05635 Genome accession   NZ_CP139039
Coordinates   1162448..1163185 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli MP1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1157448..1168185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SID94_RS05605 (SID94_05605) yfiL 1157606..1157971 (-) 366 WP_001296308.1 DUF2799 domain-containing protein -
  SID94_RS05610 (SID94_05610) aroF 1158182..1159252 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  SID94_RS05615 (SID94_05615) tyrA 1159263..1160384 (+) 1122 WP_000225219.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  SID94_RS05620 (SID94_05620) pheA 1160427..1161587 (-) 1161 WP_000200125.1 bifunctional chorismate mutase/prephenate dehydratase -
  SID94_RS05625 (SID94_05625) pheL 1161686..1161733 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  SID94_RS05630 (SID94_05630) raiA 1161837..1162178 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  SID94_RS05635 (SID94_05635) comL 1162448..1163185 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  SID94_RS05640 (SID94_05640) rluD 1163320..1164300 (+) 981 WP_000079111.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  SID94_RS05645 (SID94_05645) yfiH 1164297..1165028 (+) 732 WP_000040137.1 purine nucleoside phosphorylase YfiH -
  SID94_RS05650 (SID94_05650) clpC 1165158..1167731 (+) 2574 WP_001314061.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=829115 SID94_RS05635 WP_000197686.1 1162448..1163185(-) (comL) [Escherichia coli MP1]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=829115 SID94_RS05635 WP_000197686.1 1162448..1163185(-) (comL) [Escherichia coli MP1]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376