Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   H7677_RS07880 Genome accession   NZ_AP023391
Coordinates   1607705..1608394 (-) Length   229 a.a.
NCBI ID   WP_184493351.1    Uniprot ID   -
Organism   Streptococcus suis strain DAT299     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1602705..1613394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7677_RS07860 (DAT299_15130) - 1603477..1604628 (-) 1152 WP_184493349.1 replication initiation/membrane attachment protein -
  H7677_RS07865 (DAT299_15140) nrdR 1604615..1605106 (-) 492 WP_002938341.1 transcriptional regulator NrdR -
  H7677_RS07870 (DAT299_15150) - 1605178..1606308 (-) 1131 WP_002942701.1 AI-2E family transporter -
  H7677_RS07875 (DAT299_15160) - 1606537..1607061 (-) 525 WP_015647271.1 hypothetical protein -
  H7677_RS07880 (DAT299_15170) covR 1607705..1608394 (-) 690 WP_184493351.1 DNA-binding response regulator Regulator
  H7677_RS07885 (DAT299_15180) gndA 1608476..1609903 (-) 1428 WP_184493353.1 NADP-dependent phosphogluconate dehydrogenase -
  H7677_RS07890 (DAT299_15190) - 1610000..1610539 (-) 540 WP_184493355.1 YceD family protein -
  H7677_RS07895 (DAT299_15200) trxB 1610549..1611466 (-) 918 WP_002942687.1 thioredoxin-disulfide reductase -
  H7677_RS07900 (DAT299_15210) - 1611480..1611704 (-) 225 WP_029186138.1 DUF4059 family protein -
  H7677_RS07905 (DAT299_15220) - 1611722..1613065 (-) 1344 WP_024380515.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26269.16 Da        Isoelectric Point: 5.4013

>NTDB_id=82907 H7677_RS07880 WP_184493351.1 1607705..1608394(-) (covR) [Streptococcus suis strain DAT299]
MAKKILIAGKERNLSHFVSMELQKKDYLVDYASTGKEAMSLAHETDFDLILMSFQLSDMSSKELATELLAIKPATVMIVV
VEPTEVSQYGEEVLSYAVSYVVKPFVISELVEQISAIFRGRDFIDNNCKQVHMHAAYRDLKVDFQNRTVTRGDELINLTR
REYDLLATLMNSPEPVSREQLLERVWKYEAASETNVVDVYIRYLRGKLDLPHQDSYIKTVRGVGYAMRD

Nucleotide


Download         Length: 690 bp        

>NTDB_id=82907 H7677_RS07880 WP_184493351.1 1607705..1608394(-) (covR) [Streptococcus suis strain DAT299]
ATGGCTAAGAAAATTTTGATTGCTGGTAAAGAACGCAATCTTTCGCATTTTGTTTCCATGGAATTGCAGAAAAAAGACTA
TCTTGTTGATTATGCGTCGACAGGGAAAGAGGCTATGTCCTTGGCACATGAAACGGATTTTGACTTGATTCTGATGAGTT
TTCAGCTTTCAGACATGTCCAGCAAGGAATTGGCTACAGAACTATTAGCGATAAAACCAGCCACGGTCATGATTGTGGTA
GTTGAGCCGACAGAAGTTAGTCAATATGGGGAAGAAGTTCTCTCTTATGCTGTTTCCTACGTGGTGAAGCCCTTTGTCAT
CAGTGAGTTAGTGGAGCAAATCTCTGCGATTTTTCGTGGTCGTGATTTTATTGACAATAACTGTAAACAGGTTCACATGC
ATGCGGCCTATCGTGATTTGAAGGTTGATTTTCAAAATCGAACAGTGACTCGAGGTGATGAATTGATTAATTTGACCCGC
CGAGAGTATGATCTGTTGGCGACCTTAATGAATAGCCCAGAGCCTGTTAGTCGAGAACAACTTCTTGAGCGTGTTTGGAA
ATATGAAGCGGCTTCTGAGACCAATGTCGTCGATGTATATATTCGCTATCTACGTGGTAAACTGGATTTGCCACATCAAG
ATTCATATATAAAAACAGTTCGTGGTGTCGGATATGCCATGCGCGATTGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-227)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

48.052

100

0.485
  covR Lactococcus lactis subsp. lactis strain DGCC12653

42.373

100

0.437

Multiple sequence alignment