Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | QLQ55_RS04615 | Genome accession | NZ_CP124886 |
| Coordinates | 903225..903752 (+) | Length | 175 a.a. |
| NCBI ID | WP_010783687.1 | Uniprot ID | - |
| Organism | Enterococcus faecalis strain EfsPF13 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 894009..929917 | 903225..903752 | within | 0 |
Gene organization within MGE regions
Location: 894009..929917
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QLQ55_RS04530 (QLQ55_04530) | - | 894009..895145 (-) | 1137 | WP_002401948.1 | site-specific integrase | - |
| QLQ55_RS04535 (QLQ55_04535) | - | 895270..895854 (-) | 585 | WP_002401949.1 | DUF4352 domain-containing protein | - |
| QLQ55_RS04540 (QLQ55_04540) | - | 895936..896193 (-) | 258 | Protein_874 | toxin | - |
| QLQ55_RS04545 (QLQ55_04545) | - | 896221..896958 (-) | 738 | WP_002401950.1 | DUF4950 domain-containing protein | - |
| QLQ55_RS04550 (QLQ55_04550) | - | 896980..897618 (-) | 639 | WP_010783680.1 | ImmA/IrrE family metallo-endopeptidase | - |
| QLQ55_RS04555 (QLQ55_04555) | - | 897633..897977 (-) | 345 | WP_010731661.1 | helix-turn-helix transcriptional regulator | - |
| QLQ55_RS04560 (QLQ55_04560) | - | 898287..898463 (+) | 177 | WP_002364354.1 | helix-turn-helix transcriptional regulator | - |
| QLQ55_RS04565 (QLQ55_04565) | - | 898477..898815 (+) | 339 | WP_002401953.1 | DUF771 domain-containing protein | - |
| QLQ55_RS04570 (QLQ55_04570) | - | 898818..899531 (+) | 714 | WP_104681144.1 | Rha family transcriptional regulator | - |
| QLQ55_RS04575 (QLQ55_04575) | - | 899542..899727 (+) | 186 | WP_002364665.1 | hypothetical protein | - |
| QLQ55_RS04580 (QLQ55_04580) | - | 899739..899912 (+) | 174 | WP_002395693.1 | hypothetical protein | - |
| QLQ55_RS04585 (QLQ55_04585) | - | 900020..900322 (+) | 303 | WP_010828389.1 | hypothetical protein | - |
| QLQ55_RS04590 (QLQ55_04590) | - | 900408..900731 (+) | 324 | WP_033600921.1 | hypothetical protein | - |
| QLQ55_RS04595 (QLQ55_04595) | - | 900724..901410 (+) | 687 | WP_050444148.1 | DUF1071 domain-containing protein | - |
| QLQ55_RS04600 (QLQ55_04600) | - | 901415..902056 (+) | 642 | WP_100966715.1 | putative HNHc nuclease | - |
| QLQ55_RS04605 (QLQ55_04605) | - | 902076..902927 (+) | 852 | WP_025192966.1 | hypothetical protein | - |
| QLQ55_RS04610 (QLQ55_04610) | - | 902927..903235 (+) | 309 | WP_010783686.1 | MazG-like family protein | - |
| QLQ55_RS04615 (QLQ55_04615) | ssb | 903225..903752 (+) | 528 | WP_010783687.1 | single-stranded DNA-binding protein | Machinery gene |
| QLQ55_RS04620 (QLQ55_04620) | - | 903764..904093 (+) | 330 | WP_002402237.1 | hypothetical protein | - |
| QLQ55_RS04625 (QLQ55_04625) | - | 904113..904319 (+) | 207 | WP_002365163.1 | hypothetical protein | - |
| QLQ55_RS04630 (QLQ55_04630) | - | 904373..904855 (+) | 483 | WP_174114616.1 | class I SAM-dependent methyltransferase | - |
| QLQ55_RS04635 (QLQ55_04635) | - | 904933..905142 (+) | 210 | WP_125203797.1 | hypothetical protein | - |
| QLQ55_RS04640 (QLQ55_04640) | - | 905129..905353 (+) | 225 | WP_010829396.1 | hypothetical protein | - |
| QLQ55_RS04645 (QLQ55_04645) | - | 905378..905920 (+) | 543 | WP_231434025.1 | hypothetical protein | - |
| QLQ55_RS04650 (QLQ55_04650) | - | 905932..906144 (+) | 213 | WP_002368223.1 | hypothetical protein | - |
| QLQ55_RS04655 (QLQ55_04655) | - | 906147..906665 (+) | 519 | WP_174114613.1 | DUF1642 domain-containing protein | - |
| QLQ55_RS04660 (QLQ55_04660) | - | 906848..907057 (+) | 210 | WP_002402424.1 | hypothetical protein | - |
| QLQ55_RS04665 (QLQ55_04665) | - | 907058..907465 (+) | 408 | WP_002364505.1 | transcriptional regulator | - |
| QLQ55_RS04670 (QLQ55_04670) | - | 907713..908429 (+) | 717 | WP_002364503.1 | hypothetical protein | - |
| QLQ55_RS04675 (QLQ55_04675) | - | 908498..908959 (+) | 462 | WP_002399183.1 | terminase small subunit | - |
| QLQ55_RS04680 (QLQ55_04680) | - | 908949..910223 (+) | 1275 | WP_002364500.1 | PBSX family phage terminase large subunit | - |
| QLQ55_RS04685 (QLQ55_04685) | - | 910236..911711 (+) | 1476 | WP_025186476.1 | phage portal protein | - |
| QLQ55_RS04690 (QLQ55_04690) | - | 911686..913470 (+) | 1785 | WP_002399185.1 | head protein | - |
| QLQ55_RS04695 (QLQ55_04695) | - | 913471..913701 (+) | 231 | WP_002364496.1 | hypothetical protein | - |
| QLQ55_RS04700 (QLQ55_04700) | - | 913758..914078 (+) | 321 | WP_002364495.1 | hypothetical protein | - |
| QLQ55_RS04705 (QLQ55_04705) | - | 914297..914923 (+) | 627 | WP_002364494.1 | DUF4355 domain-containing protein | - |
| QLQ55_RS04710 (QLQ55_04710) | - | 914937..915839 (+) | 903 | WP_002364492.1 | DUF5309 family protein | - |
| QLQ55_RS04715 (QLQ55_04715) | - | 915863..916099 (+) | 237 | WP_002372022.1 | hypothetical protein | - |
| QLQ55_RS04720 (QLQ55_04720) | - | 916108..916452 (+) | 345 | WP_002364490.1 | hypothetical protein | - |
| QLQ55_RS04725 (QLQ55_04725) | - | 916449..916826 (+) | 378 | WP_002364489.1 | hypothetical protein | - |
| QLQ55_RS04730 (QLQ55_04730) | - | 916819..917217 (+) | 399 | WP_002399186.1 | HK97 gp10 family phage protein | - |
| QLQ55_RS04735 (QLQ55_04735) | - | 917221..917595 (+) | 375 | WP_002364487.1 | DUF6838 family protein | - |
| QLQ55_RS04740 (QLQ55_04740) | - | 917596..918438 (+) | 843 | WP_015543831.1 | major tail protein | - |
| QLQ55_RS04745 (QLQ55_04745) | - | 918491..918844 (+) | 354 | WP_002364485.1 | hypothetical protein | - |
| QLQ55_RS04750 (QLQ55_04750) | - | 919093..922011 (+) | 2919 | WP_174114615.1 | tape measure protein | - |
| QLQ55_RS04755 (QLQ55_04755) | - | 922001..922735 (+) | 735 | WP_002402410.1 | tail protein | - |
| QLQ55_RS04760 (QLQ55_04760) | - | 922717..925431 (+) | 2715 | WP_174114612.1 | phage tail spike protein | - |
| QLQ55_RS04765 (QLQ55_04765) | - | 925447..926349 (+) | 903 | WP_075551640.1 | phage baseplate upper protein | - |
| QLQ55_RS04770 (QLQ55_04770) | - | 926349..926663 (+) | 315 | WP_075551639.1 | hypothetical protein | - |
| QLQ55_RS04775 (QLQ55_04775) | - | 926656..926973 (+) | 318 | WP_025193310.1 | hypothetical protein | - |
| QLQ55_RS04780 (QLQ55_04780) | - | 926973..928190 (+) | 1218 | WP_002398465.1 | glycerophosphodiester phosphodiesterase | - |
| QLQ55_RS04785 (QLQ55_04785) | - | 928220..928615 (+) | 396 | WP_010784910.1 | phage holin family protein | - |
| QLQ55_RS04790 (QLQ55_04790) | - | 928616..929917 (+) | 1302 | WP_282873984.1 | LysM peptidoglycan-binding domain-containing protein | - |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 19399.31 Da Isoelectric Point: 4.5778
>NTDB_id=828709 QLQ55_RS04615 WP_010783687.1 903225..903752(+) (ssb) [Enterococcus faecalis strain EfsPF13]
MINNVVLIGRLTKDIDLRYTASGSAVGSFTLAVNRNFTNQNGEREADFINCVIWRKPAETMANYTRKGTLLGVVGRIQTR
NYDNQQGQRVYVTEVVCESFQLLEPKSANENRNSIQMSQNDGTSVQNNFEGNYATNQNKGLNQQNNSQQMSFGGDVDPFA
GAGNSIDISDDDLPF
MINNVVLIGRLTKDIDLRYTASGSAVGSFTLAVNRNFTNQNGEREADFINCVIWRKPAETMANYTRKGTLLGVVGRIQTR
NYDNQQGQRVYVTEVVCESFQLLEPKSANENRNSIQMSQNDGTSVQNNFEGNYATNQNKGLNQQNNSQQMSFGGDVDPFA
GAGNSIDISDDDLPF
Nucleotide
Download Length: 528 bp
>NTDB_id=828709 QLQ55_RS04615 WP_010783687.1 903225..903752(+) (ssb) [Enterococcus faecalis strain EfsPF13]
ATGATAAATAATGTGGTATTAATCGGAAGGCTGACAAAAGATATAGATTTACGCTACACCGCAAGTGGTTCTGCAGTTGG
AAGCTTTACTCTTGCTGTGAACCGTAACTTTACAAACCAAAACGGCGAACGAGAAGCGGATTTTATCAACTGTGTAATTT
GGCGTAAGCCTGCTGAAACAATGGCTAATTATACTCGTAAAGGAACATTATTAGGAGTTGTTGGCAGAATTCAAACTCGT
AATTATGACAACCAACAAGGCCAACGTGTCTATGTGACTGAAGTTGTTTGCGAGAGTTTCCAATTATTAGAGCCAAAAAG
CGCCAATGAGAATAGAAATAGCATTCAGATGTCACAGAATGACGGTACAAGCGTTCAAAACAATTTCGAGGGTAATTATG
CCACGAATCAAAACAAAGGCTTAAATCAGCAAAATAACAGCCAACAAATGTCGTTTGGTGGAGATGTAGATCCGTTCGCA
GGTGCAGGTAATTCAATCGACATTAGCGATGATGATCTGCCTTTTTAG
ATGATAAATAATGTGGTATTAATCGGAAGGCTGACAAAAGATATAGATTTACGCTACACCGCAAGTGGTTCTGCAGTTGG
AAGCTTTACTCTTGCTGTGAACCGTAACTTTACAAACCAAAACGGCGAACGAGAAGCGGATTTTATCAACTGTGTAATTT
GGCGTAAGCCTGCTGAAACAATGGCTAATTATACTCGTAAAGGAACATTATTAGGAGTTGTTGGCAGAATTCAAACTCGT
AATTATGACAACCAACAAGGCCAACGTGTCTATGTGACTGAAGTTGTTTGCGAGAGTTTCCAATTATTAGAGCCAAAAAG
CGCCAATGAGAATAGAAATAGCATTCAGATGTCACAGAATGACGGTACAAGCGTTCAAAACAATTTCGAGGGTAATTATG
CCACGAATCAAAACAAAGGCTTAAATCAGCAAAATAACAGCCAACAAATGTCGTTTGGTGGAGATGTAGATCCGTTCGCA
GGTGCAGGTAATTCAATCGACATTAGCGATGATGATCTGCCTTTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
57.447 |
100 |
0.617 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.143 |
100 |
0.571 |