Detailed information NTG0828589

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QJS48_RS20340
• Genome accession: NZ_CP124866
• Coordinates: 4177599..4178399 (+)
• Length: 266 a.a.
• NCBI ID: WP_049116597.1
• Uniprot ID: -
• Organism: Klebsiella quasipneumoniae strain M7
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4172599..4183399

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QJS48_RS20305 (QJS48_20305)	gspH	4172752..4173267 (+)	516	WP_004204416.1	type II secretion system minor pseudopilin GspH	-
QJS48_RS20310 (QJS48_20310)	gspI	4173264..4173629 (+)	366	WP_004204415.1	type II secretion system minor pseudopilin GspI	-
QJS48_RS20315 (QJS48_20315)	gspJ	4173626..4174222 (+)	597	WP_282861840.1	type II secretion system minor pseudopilin GspJ	-
QJS48_RS20320 (QJS48_20320)	gspK	4174219..4175199 (+)	981	WP_077258611.1	type II secretion system minor pseudopilin GspK	-
QJS48_RS20325 (QJS48_20325)	gspL	4175192..4176388 (+)	1197	WP_109938371.1	type II secretion system protein GspL	-
QJS48_RS20330 (QJS48_20330)	-	4176381..4176866 (+)	486	WP_049093660.1	type II secretion system protein M	-
QJS48_RS20335 (QJS48_20335)	-	4176856..4177584 (+)	729	WP_186921488.1	type II secretion system protein N	-
QJS48_RS20340 (QJS48_20340)	pilD	4177599..4178399 (+)	801	WP_049116597.1	A24 family peptidase	Machinery gene
QJS48_RS20345 (QJS48_20345)	hrpB	4178447..4180876 (-)	2430	WP_186921490.1	ATP-dependent helicase HrpB	-
QJS48_RS20350 (QJS48_20350)	thpR	4180949..4181485 (+)	537	WP_049116602.1	RNA 2',3'-cyclic phosphodiesterase	-
QJS48_RS20355 (QJS48_20355)	sfsA	4181485..4182201 (+)	717	WP_004204404.1	DNA/RNA nuclease SfsA	-
QJS48_RS20360 (QJS48_20360)	dksA	4182364..4182819 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29368.95 Da
• Isoelectric Point: 8.8894

>NTDB_id=828589 QJS48_RS20340 WP_049116597.1 4177599..4178399(+) (pilD) [Klebsiella quasipneumoniae strain M7]
MTTLAALSLHFPLVWYGFLLLFGLALGSFYNVVIYRLPRMLAQTADDEPLTLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQARISWSYPLTELTTGLLFILAGALLAPGLALAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQALPQVLLFASASGLMWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGVFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=828589 QJS48_RS20340 WP_049116597.1 4177599..4178399(+) (pilD) [Klebsiella quasipneumoniae strain M7]
ATGACGACATTAGCCGCATTATCGCTGCATTTCCCCCTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTACCGTCTGCCGCGCATGCTGGCCCAGACCGCGGACGACGAGCCGCTAACCCTCAGCA
CGCCGGGCTCATCCTGTCCGCAGTGTCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGCTTCCTCTGGCTA
GGCCGTCGCGCCCGCTGCTGTCAGGCGCGCATCTCGTGGAGCTATCCGCTGACCGAGCTGACCACCGGCCTGCTGTTTAT
CCTCGCCGGGGCGCTGCTCGCGCCGGGACTGGCACTGGCGGGCGGCCTGGTGCTGCTCTCCTTTCTGCTGATACTGGCGC
GGATTGATGCCCGGACCCAGCTGCTGCCCGATCGCCTGACCCTGCCCCTGCTGTGGGCCGGACTGCTGTTTAATCTTAAC
GAGGTGTACATTGCGCTGCCGGACGCGGTCGCAGGGGCGATGGCTGGTTATCTGGCACTGTGGTCGGTCTATTGGCTGTT
CCGCCTGCTGACCGGCAAAGAGGCTCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGCTCTGCCGCAGGTGCTGTTGTTCGCCTCGGCCAGCGGGCTGATGTGGACCCTGCTGCAGCGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGAGGGGGCGTTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	45.818	100	0.474
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	44.867	98.872	0.444
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425