Detailed information NTG0828511

Bioinformatically predicted

Overview

• Name: ccrB
• Type: Machinery gene
• Locus tag: QL049_RS00200
• Genome accession: NZ_CP124856
• Coordinates: 44061..45686 (-)
• Length: 541 a.a.
• NCBI ID: WP_309256779.1
• Uniprot ID: -
• Organism: Staphylococcus pseudintermedius strain 452964 isolate human
• Function: promote SCCmec transfer (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
SCCmec	44061..47057	44061..45686	within	0

Gene organization within MGE regions

Location: 44061..47057

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QL049_RS00200 (QL049_00200)	ccrB	44061..45686 (-)	1626	WP_309256779.1	cassette chromosome recombinase CcrB	Machinery gene
QL049_RS00205 (QL049_00205)	ccrA	45708..47057 (-)	1350	WP_214547158.1	cassette chromosome recombinase CcrA	Machinery gene

Sequence

Protein

• Length: 541 a.a.
• Molecular weight: 62534.42 Da
• Isoelectric Point: 9.7263

>NTDB_id=828511 QL049_RS00200 WP_309256779.1 44061..45686(-) (ccrB) [Staphylococcus pseudintermedius strain 452964 isolate human]
MDKMKKKLVGGYIRVSTERQVEGYSIEGQITQIEQYCQFNGYELVDIYADRGISGKSMNRPELQRMLNDAKNGKLDCVMV
YKTNRLARNTSDLFTIVEELHRQNVEFFSLSERMEVKNSTGKLMLQILTSFSEFERNTILENIYTGQRQRALEGYYQGNL
PLGYNNIPDNKKELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSISAVTYILSNPFYIGKIQFAKY
KDWNDKRRKGLNDKPVIAEGKHTPIINQDLWDKVQARKKQVSKKPQVHGKGTNLLTGIIVCEKCGAAYAASNTTNTLKDG
TKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVIKHVVERVNQENQVDVAALNHDIAYKQQQFDE
INTKLKNLVQTIEDNPDLTSALKPTIHQYETQLNDITNQMNQLKHQQNQEKPSYDTKQIAALLQRIFQNIESMDKSQLKA
LYLTVIDRIDIRKDENHKKQFYVTLKLNNEIIKQLFNNNNLDEVLLNTSSLFLPQTLYFQI

Nucleotide

• Length: 1626 bp

>NTDB_id=828511 QL049_RS00200 WP_309256779.1 44061..45686(-) (ccrB) [Staphylococcus pseudintermedius strain 452964 isolate human]
ATGGATAAAATGAAGAAAAAGCTTGTAGGAGGCTACATTCGCGTGTCCACAGAGAGACAAGTAGAGGGTTATAGCATCGA
GGGACAAATTACACAAATAGAGCAATATTGCCAATTTAACGGCTATGAACTCGTTGATATATATGCAGATCGGGGTATAT
CAGGAAAATCTATGAACCGTCCTGAATTACAGCGCATGTTAAATGATGCTAAAAATGGAAAATTAGACTGTGTTATGGTT
TATAAAACAAATCGTTTGGCACGTAATACTTCCGATTTATTTACAATCGTCGAAGAACTTCATCGCCAAAATGTTGAATT
TTTTAGCTTATCTGAACGTATGGAAGTCAAAAATTCAACAGGCAAGTTAATGCTCCAGATACTTACAAGTTTTTCCGAAT
TTGAAAGAAATACAATTTTAGAGAATATTTACACCGGACAACGTCAAAGAGCTTTAGAGGGCTATTATCAAGGAAATCTT
CCATTGGGATACAATAATATACCTGATAATAAAAAAGAATTAATGATTAATCAACATGAAGCCAATATTGTGAAGTATAT
CTTTGAATCTTACGCTAAAGGTCATGGCTATCGTAAAATTGCCAATGCACTCAATCATAAAGGTTATGTCACTAAGAAGG
GTAATCCATTTAGTATTTCAGCTGTTACTTATATTCTCTCAAACCCATTCTATATTGGTAAAATTCAATTCGCAAAATAC
AAAGATTGGAATGATAAACGACGTAAAGGATTAAACGATAAGCCAGTAATCGCTGAAGGTAAACACACGCCTATTATTAA
TCAAGATTTATGGGATAAAGTGCAAGCACGTAAGAAGCAAGTAAGCAAAAAGCCACAGGTACACGGTAAAGGGACAAATC
TGTTAACTGGAATAATTGTCTGCGAAAAATGTGGTGCAGCATATGCAGCTTCAAATACAACCAACACACTCAAAGACGGT
ACTAAAAAACGCATTCGGTATTATTCATGTAGTAACTTTCGCAACAAAGGATCAAAGGTATGTTCAGCCAATAGTGTTAG
AGCTGATGTTATCGAAAAGTATGTTATGGATCAAATACTCGAAATAGTCAAAAGTGATAAAGTTATCAAACATGTTGTCG
AACGTGTTAATCAAGAAAATCAAGTCGATGTAGCTGCGCTCAATCATGATATTGCTTATAAACAACAACAATTTGATGAA
ATTAACACTAAACTTAAAAATCTAGTTCAAACCATCGAAGACAATCCAGACTTAACATCTGCACTCAAACCAACCATTCA
TCAATATGAAACACAACTCAATGACATTACAAATCAAATGAATCAGCTCAAGCACCAACAAAATCAAGAGAAACCATCTT
ATGATACGAAACAAATCGCTGCCCTATTACAACGAATATTTCAAAATATAGAATCCATGGATAAATCACAGCTCAAAGCT
TTGTACCTAACGGTTATTGACCGTATTGATATTCGTAAAGACGAGAATCATAAAAAACAATTCTATGTCACTCTCAAGCT
CAATAATGAAATTATTAAACAACTTTTTAATAATAACAATCTAGACGAAGTGCTCCTCAACACTTCGTCTTTGTTTTTGC
CTCAAACACTCTACTTTCAAATATAA

Domains

Predicted by InterproScan.

• Recombinase zinc beta ribbon domain (Zn_ribbon_recom) (294-359)

• Recombinase (Recombinase) (179-279)

• Resolvase, N terminal domain (Resolvase) (11-154)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ccrB	Staphylococcus aureus N315	79.889	100	0.8