Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QJ053_RS05885 Genome accession   NZ_CP124853
Coordinates   1198783..1199655 (+) Length   290 a.a.
NCBI ID   WP_410530603.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ED83     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1193783..1204655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJ053_RS05865 (QJ053_05860) sucC 1193897..1195063 (+) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  QJ053_RS05870 (QJ053_05865) sucD 1195085..1195993 (+) 909 WP_000110252.1 succinate--CoA ligase subunit alpha -
  QJ053_RS05875 (QJ053_05870) - 1196220..1197338 (+) 1119 WP_410530601.1 LysM peptidoglycan-binding domain-containing protein -
  QJ053_RS05880 (QJ053_05875) fmhC 1197366..1198610 (+) 1245 WP_410530602.1 FemA/FemB family glycyltransferase FmhC -
  QJ053_RS05885 (QJ053_05880) dprA 1198783..1199655 (+) 873 WP_410530603.1 DNA-processing protein DprA Machinery gene
  QJ053_RS05890 (QJ053_05885) topA 1199829..1201904 (+) 2076 WP_001557331.1 type I DNA topoisomerase -
  QJ053_RS05895 (QJ053_05890) trmFO 1202060..1203367 (+) 1308 WP_000195263.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33505.92 Da        Isoelectric Point: 9.5191

>NTDB_id=828419 QJ053_RS05885 WP_410530603.1 1198783..1199655(+) (dprA) [Staphylococcus aureus strain ED83]
MIRLFLLKLYWAHFSTKQIHQFLMAYPNVIKEGGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDSEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEIGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=828419 QJ053_RS05885 WP_410530603.1 1198783..1199655(+) (dprA) [Staphylococcus aureus strain ED83]
TTGATTAGACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGGGGGCAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATTCTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATTGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGCACATTAGC
ATTAAGAAATAAAATAGAAGAAATAGGTTTAGTTATATCCGAATATCCACCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGTAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

98.966

100

0.99
  dprA Staphylococcus aureus N315

98.621

100

0.986