Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   QJ053_RS04590 Genome accession   NZ_CP124853
Coordinates   935532..936518 (+) Length   328 a.a.
NCBI ID   WP_410530566.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ED83     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 930532..941518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJ053_RS04565 (QJ053_04565) opp4B 930745..931707 (+) 963 WP_000593417.1 oligopeptide ABC transporter permease -
  QJ053_RS04570 (QJ053_04570) opp4C 931719..932600 (+) 882 WP_001180262.1 oligopeptide ABC transporter permease -
  QJ053_RS04575 (QJ053_04575) trpS 932642..933631 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  QJ053_RS04580 (QJ053_04580) spxA 933926..934321 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  QJ053_RS04585 (QJ053_04585) mecA 934692..935411 (+) 720 WP_001217728.1 adaptor protein MecA -
  QJ053_RS04590 (QJ053_04590) coiA 935532..936518 (+) 987 WP_410530566.1 competence protein CoiA Machinery gene
  QJ053_RS04595 (QJ053_04595) pepF 936566..938374 (+) 1809 WP_410530567.1 oligoendopeptidase F -
  QJ053_RS04600 (QJ053_04600) yjbH 938834..939640 (-) 807 WP_000896691.1 protease adaptor protein YjbH -
  QJ053_RS04605 (QJ053_04605) - 939663..940028 (-) 366 WP_000214067.1 truncated hemoglobin YjbI -
  QJ053_RS04610 (QJ053_04610) - 940132..940725 (-) 594 WP_000224620.1 CYTH domain-containing protein -
  QJ053_RS04615 (QJ053_04615) - 940911..941258 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38775.32 Da        Isoelectric Point: 9.6486

>NTDB_id=828417 QJ053_RS04590 WP_410530566.1 935532..936518(+) (coiA) [Staphylococcus aureus strain ED83]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIIMFQQIQYLGGHKYVAEKKNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDHEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVSDNLNYFKLKKFIVALESKTAIIEKLINNYLNISSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=828417 QJ053_RS04590 WP_410530566.1 935532..936518(+) (coiA) [Staphylococcus aureus strain ED83]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATTATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAAGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAGTTACAG
TTAACTGATCACGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTAGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

97.256

100

0.973
  coiA Staphylococcus aureus N315

96.646

100

0.966