Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   QJ053_RS02655 Genome accession   NZ_CP124853
Coordinates   545798..546367 (+) Length   189 a.a.
NCBI ID   WP_410530494.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ED83     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 540798..551367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJ053_RS02630 (QJ053_02630) cysE 542011..542658 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  QJ053_RS02635 (QJ053_02635) cysS 542642..544042 (+) 1401 WP_000631982.1 cysteine--tRNA ligase -
  QJ053_RS02640 (QJ053_02640) - 544035..544439 (+) 405 WP_000370181.1 Mini-ribonuclease 3 -
  QJ053_RS02645 (QJ053_02645) rlmB 544447..545193 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  QJ053_RS02650 (QJ053_02650) - 545193..545717 (+) 525 WP_000664740.1 NYN domain-containing protein -
  QJ053_RS02655 (QJ053_02655) sigH 545798..546367 (+) 570 WP_410530494.1 sigma-70 family RNA polymerase sigma factor Regulator
  QJ053_RS02660 (QJ053_02660) rpmG 546482..546625 (+) 144 WP_001791441.1 50S ribosomal protein L33 -
  QJ053_RS02665 (QJ053_02665) secE 546681..546863 (+) 183 WP_001074474.1 preprotein translocase subunit SecE -
  QJ053_RS02670 (QJ053_02670) nusG 546876..547424 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  QJ053_RS02675 (QJ053_02675) rplK 547605..548027 (+) 423 WP_410530126.1 50S ribosomal protein L11 -
  QJ053_RS02680 (QJ053_02680) rplA 548235..548924 (+) 690 WP_001074620.1 50S ribosomal protein L1 -
  QJ053_RS02685 (QJ053_02685) rplJ 549198..549698 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  QJ053_RS02690 (QJ053_02690) rplL 549741..550109 (+) 369 WP_001273587.1 50S ribosomal protein L7/L12 -
  QJ053_RS02695 (QJ053_02695) - 550284..550892 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23095.98 Da        Isoelectric Point: 9.6253

>NTDB_id=828412 QJ053_RS02655 WP_410530494.1 545798..546367(+) (sigH) [Staphylococcus aureus strain ED83]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSAEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=828412 QJ053_RS02655 WP_410530494.1 545798..546367(+) (sigH) [Staphylococcus aureus strain ED83]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATACGGCGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGATTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGCAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.413

100

0.984
  sigH Staphylococcus aureus N315

98.413

100

0.984