Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   QLQ87_RS00505 Genome accession   NZ_CP124841
Coordinates   91397..92536 (-) Length   379 a.a.
NCBI ID   WP_113720068.1    Uniprot ID   A0AAX3VVZ6
Organism   Aeromonas salmonicida strain 57     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 86397..97536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ87_RS00480 (QLQ87_00480) - 86397..86624 (+) 228 WP_005314583.1 FeoA family protein -
  QLQ87_RS00485 (QLQ87_00485) feoB 86621..88891 (+) 2271 WP_113720066.1 Fe(2+) transporter permease subunit FeoB -
  QLQ87_RS00490 (QLQ87_00490) - 88888..89130 (+) 243 WP_021140137.1 FeoC-like transcriptional regulator -
  QLQ87_RS00495 (QLQ87_00495) - 89227..89706 (-) 480 WP_162626179.1 WbuC family cupin fold metalloprotein -
  QLQ87_RS00500 (QLQ87_00500) glgC 89852..91123 (-) 1272 WP_113720067.1 glucose-1-phosphate adenylyltransferase -
  QLQ87_RS00505 (QLQ87_00505) pilU 91397..92536 (-) 1140 WP_113720068.1 type IVa pilus ATPase TapW Machinery gene
  QLQ87_RS00510 (QLQ87_00510) - 92596..92952 (-) 357 WP_282683978.1 DMT family protein -
  QLQ87_RS00515 (QLQ87_00515) - 93064..93795 (+) 732 WP_282683979.1 transporter substrate-binding domain-containing protein -
  QLQ87_RS00520 (QLQ87_00520) btuC 93899..94906 (+) 1008 WP_058394150.1 vitamin B12 ABC transporter permease BtuC -
  QLQ87_RS00525 (QLQ87_00525) - 94966..95775 (+) 810 WP_192896372.1 ATP-binding cassette domain-containing protein -
  QLQ87_RS00530 (QLQ87_00530) aac(6') 95798..96256 (-) 459 WP_282683980.1 aminoglycoside 6'-N-acetyltransferase -
  QLQ87_RS00535 (QLQ87_00535) - 96264..97328 (-) 1065 WP_282683981.1 3-deoxy-7-phosphoheptulonate synthase -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 42281.31 Da        Isoelectric Point: 6.4288

>NTDB_id=828302 QLQ87_RS00505 WP_113720068.1 91397..92536(-) (pilU) [Aeromonas salmonicida strain 57]
MELRDMLQILAKQDGSDLYLSTGAPPCAKFNGGLRPLSETSLEPGEVAKIAADIMDGEQKQQFERELEMNLAISLPQIGR
FRINIFKQRNEVSLVARNIKTEIPRFEDLKLPPVLLDTIMEKRGLVLFVGGTGSGKSTSLAALIDHRNRNSGGHIITIED
PVEFVHRHRKSIINQREVGVDTRSFHAALKNTLRQAPDVILIGEIRDRETMEHALAFSETGHLAISTLHANNANQALDRI
INFFPEERRPQLLNDLGNNLKAFVSQRLVKTTDGGRRAAVEIMLGTHTIRDMIKRGEFGSLKEVMEKSRALGMVTFDSAL
FDLVVEGVIEEEEAVKNADSANNLRLKIKLWKEKGQIANSADATGWSLEPTKDESNDLF

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=828302 QLQ87_RS00505 WP_113720068.1 91397..92536(-) (pilU) [Aeromonas salmonicida strain 57]
ATGGAATTGCGAGACATGCTACAGATCCTGGCCAAGCAGGACGGCTCAGACCTCTATCTGTCGACCGGCGCCCCTCCCTG
TGCCAAGTTCAACGGTGGGCTGCGCCCACTGTCCGAGACGTCGCTCGAACCGGGTGAAGTAGCCAAGATCGCTGCCGACA
TCATGGATGGCGAGCAGAAGCAGCAGTTCGAGCGGGAGCTGGAGATGAACCTCGCCATCTCCCTGCCCCAGATAGGCCGT
TTTCGGATCAACATCTTCAAGCAGCGCAACGAAGTCTCCCTGGTGGCCCGCAACATCAAGACAGAGATCCCCCGCTTTGA
AGATCTCAAACTGCCGCCCGTGCTGCTCGACACCATCATGGAGAAACGGGGTCTGGTGCTGTTTGTGGGCGGAACAGGCT
CGGGCAAATCCACCTCGCTGGCGGCCCTCATCGACCATCGCAATCGCAACAGCGGCGGCCACATCATCACCATCGAGGAT
CCGGTGGAGTTCGTCCATCGTCACCGCAAGAGCATCATCAACCAGCGGGAGGTGGGGGTAGATACCCGCAGCTTCCACGC
CGCGCTCAAGAACACCCTGCGCCAGGCACCGGATGTGATCCTCATCGGTGAAATTCGCGATCGCGAGACCATGGAGCATG
CCCTTGCCTTCTCCGAGACCGGGCATCTGGCCATCTCCACCCTGCACGCCAACAACGCCAACCAGGCGCTGGATCGCATC
ATCAACTTCTTCCCGGAAGAGCGCCGGCCACAGTTGCTCAACGATCTTGGCAACAACCTCAAGGCATTTGTCTCCCAGCG
ACTGGTGAAAACCACAGACGGTGGCCGCCGTGCGGCGGTGGAGATCATGCTGGGCACCCACACCATCCGCGACATGATCA
AACGCGGCGAATTTGGCAGCCTGAAAGAGGTGATGGAGAAATCCAGAGCGCTCGGCATGGTCACCTTCGACAGCGCCCTG
TTCGATCTGGTGGTGGAAGGGGTGATAGAGGAGGAAGAAGCGGTGAAAAACGCCGACTCGGCCAACAACCTGCGCCTCAA
AATCAAGTTGTGGAAAGAGAAGGGCCAGATCGCCAACAGTGCGGATGCCACCGGCTGGAGTCTGGAGCCCACCAAGGACG
AAAGTAACGATCTCTTCTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(114-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

53.158

100

0.533
  pilU Acinetobacter baylyi ADP1

53.239

93.668

0.499
  pilU Vibrio cholerae strain A1552

50

92.348

0.462
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

40.476

99.736

0.404
  pilT Legionella pneumophila strain Lp02

42.216

88.127

0.372
  pilT Legionella pneumophila strain ERS1305867

42.216

88.127

0.372
  pilT Pseudomonas aeruginosa PAK

40.698

90.765

0.369
  pilT Pseudomonas stutzeri DSM 10701

40.407

90.765

0.367
  pilT Acinetobacter baumannii strain A118

41.018

88.127

0.361
  pilT Acinetobacter baumannii D1279779

41.018

88.127

0.361
  pilT Acinetobacter nosocomialis M2

41.018

88.127

0.361